Topics tagged custom-genome

Topic	Replies	Views	Activity
Adding genome reference? usegalaxy.org support reference-index , custom-genome , reference-annotation , reference-genome	2	37	April 23, 2024
HISAT2 crash/failure usegalaxy.org support custom-genome , troubleshooting , mapping , memory-failure	7	967	March 20, 2024
Problems Running MirDeep2 custom-genome	3	77	March 4, 2024
Reference genome options server-admin , reference-index , custom-genome	1	120	February 14, 2024
Addition Of Reference Genome custom-genome	1	270	February 13, 2024
Add a new reference genome for RNAstar usegalaxy.org support custom-genome , transcriptomics	1	214	February 1, 2024
Custom reference genome troubleshooting reference-index , custom-genome	1	79	January 30, 2024
Reference genomes at public Galaxy servers: GRCh38/hg38 example Resources reference-index , custom-genome , reference-genome , resources	1	153	January 29, 2024
Custom genome + custom build: How to use a genome that is not natively indexed at the server you are working at usegalaxy.eu support fasta-manipulation , custom-genome , reference-genome , custom-build	5	499	January 30, 2024
Reference Genome usegalaxy.org support custom-genome , reference-genome , custom-build	7	213	January 29, 2024
HiSat reference genomce seq.fasta GRCh38 does not work and HiSat2 does not accept other ref.seq.fasta usegalaxy.org support custom-genome , mapping	1	383	December 21, 2023
Mapping Leishmania transcript using RNA STAR custom-genome , reference-annotation , reference-genome	1	141	December 12, 2023
paired-end histogram failure usegalaxy.org support custom-genome	3	178	December 12, 2023
bedgraph-to-bigwig error usegalaxy.eu support custom-genome , macs2 , chrominfo , custom-build	3	213	November 14, 2023
Would it be possible for galaxy to include Camelus dromedarius reference genome in built in index ? reference-index , custom-genome , reference-genome , custom-build	4	291	August 16, 2023
Can not launche Extract Genomic DNA usegalaxy.eu support custom-genome	4	236	December 21, 2023
RNA star with reference genome from history error usegalaxy.eu support custom-genome , transcriptomics , reference-annotation , reference-genome , custom-build , deseq2	1	231	August 7, 2023
CHM13 T2T genome not found in options for some tools usegalaxy.org support database , custom-genome , macs2 , mapping , custom-build	10	652	July 20, 2023
How to get the genome of interest listed in RNA STAR in Galaxy reference-index , custom-genome , transcriptomics	4	303	July 19, 2023
Expanding the built-in reference genomes usegalaxy.eu support custom-genome , reference-annotation , reference-genome , custom-build	2	266	July 12, 2023
BWA-MEM2 Built in Genome Indexes is not working. custom-genome , mapping , bwa_mem2	2	213	December 21, 2023
missing reference genome (Aedes aegypti AaegL5.0) usegalaxy.org.au support reference-index , custom-genome , mapping , transcriptomics , custom-build , featurecounts	5	269	June 13, 2023
version and source of the galaxy built-in genome usegalaxy.eu support reference-index , custom-genome , reference-genome , cvmfs , custom-build	2	741	May 5, 2023
Source of built in reference genomes usegalaxy.eu support custom-genome , reference-genome , cvmfs , custom-build	1	343	May 5, 2023
RNA seq analysis on transgenic animal custom-genome , mapping , transcriptomics , reference-annotation	13	530	April 26, 2023
Is BWA-meth alignment on PE50 possible? usegalaxy.org support custom-genome , mapping	3	252	April 20, 2023
Unresponsive page when load fasta file to build rice (Oryza sativa) genome usegalaxy.org support custom-genome , mapping , custom-build , server-status	1	220	April 13, 2023
mirdeep2 errors -- Solution: verify input format usegalaxy.org support custom-genome , troubleshooting , reference-genome	1	352	April 13, 2023
Genome build for dog in RNA STAR usegalaxy.eu support reference-index , custom-genome , reference-genome , custom-build	5	326	March 20, 2023
Reference sequence NCBI ID number usegalaxy.org.au support custom-genome , mapping	1	286	March 7, 2023