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Bowtie2 and BWA aligners
|
|
7
|
101
|
March 22, 2024
|
|
Too many duplicated sequences OR unassigned because of mapping quality
|
|
2
|
114
|
March 20, 2024
|
|
HISAT2 crash/failure
|
|
7
|
966
|
March 20, 2024
|
|
HISAT2 job killed due to not enough memory allocated for the job
|
|
5
|
119
|
March 19, 2024
|
|
DIAMOND --all option not working
|
|
1
|
65
|
March 6, 2024
|
|
Diamond troubleshooting
|
|
7
|
110
|
February 9, 2024
|
|
Mapping with STAR Error
|
|
5
|
137
|
January 26, 2024
|
|
RNA STAR stuck on running
|
|
2
|
152
|
December 23, 2023
|
|
Je-Demultiplex outputs not working in alignment stage
|
|
1
|
260
|
December 21, 2023
|
|
Galaxy Docker - Error for all but 2 parallel jobs
|
|
1
|
266
|
December 21, 2023
|
|
HiSat reference genomce seq.fasta GRCh38 does not work and HiSat2 does not accept other ref.seq.fasta
|
|
1
|
382
|
December 21, 2023
|
|
Resolved: Tools are missing in my account usegalaxy.org (main server)
|
|
7
|
401
|
December 15, 2023
|
|
Filter reference/subject sequences based on mapping
|
|
3
|
112
|
December 12, 2023
|
|
Time for Running RNA Seq Workflow
|
|
1
|
205
|
December 1, 2023
|
|
BBtools: BBmap aligned
|
|
2
|
126
|
November 30, 2023
|
|
Testing Pulsar (GTN archive 2023-11-01) errors
|
|
1
|
162
|
November 29, 2023
|
|
There are no locally cached or built-in genomes on use.galaxy.org
|
|
1
|
166
|
November 29, 2023
|
|
why does computematrix programe run so long?
|
|
4
|
209
|
November 16, 2023
|
|
Issue with StringTie
|
|
5
|
1692
|
December 20, 2023
|
|
StringTie producing empty column for gene and transcript counts
|
|
9
|
296
|
December 21, 2023
|
|
Request for megablast tool
|
|
3
|
162
|
November 3, 2023
|
|
Smart-seq2 data analysis
|
|
2
|
367
|
November 2, 2023
|
|
RNA-Seq analysis in Galaxy
|
|
12
|
465
|
December 21, 2023
|
|
DeepTools: bamCoverage output doesn't match manual counts
|
|
6
|
175
|
October 19, 2023
|
|
Error of Deseq2
|
|
1
|
269
|
October 16, 2023
|
|
Usage help -- single end versus paired end BAM options
|
|
5
|
435
|
November 10, 2023
|
|
HISAT2 Empty summary file
|
|
2
|
589
|
October 12, 2023
|
|
Bowtie2 filtering reads
|
|
1
|
280
|
September 28, 2023
|
|
compare Galaxy europe aligners (bowtie2, BWA and minimap2) and CLC genomics workbench
|
|
11
|
433
|
September 27, 2023
|
|
mm10 version rna star
|
|
1
|
197
|
September 21, 2023
|