BRAKER3 fails with ‘Genemark’ error

[wm75]

Please see this prior Q&A:

BRAKER3 fails with 'Genemark not installed' error

[image]: When running BRAKER3 for genome annotation on Galaxy Europe, the job fails with: Error: "Genemark is not installed properly on this Galaxy server." Upload genome (FASTA) and protein-seq data. Run BRAKER3 with default parameters. Job crashes during execution. Expected vs. Actual Behavior: Expected: Successful annotation. Actual: Tool dependency error (Genemark missing). Troubleshooting Attempted: Checked Galaxy Europe documentation. Re-ran with different input data → same error. Question: Is Genemark intentionally unavailable on Galaxy Europe? Are there workarounds (e.g., alternative tools)?