Galaxy Community Help

Topic	Replies	Views	Activity
What should I do if my data exceeds the given 250GB of storage? account , resources , manage-quota , scratch-space I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?	3	322	August 15, 2024
Troubleshooting resources for errors or unexpected results share-or-publish , troubleshooting , queued-gray-datasets , resources How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…	5	10309	April 17, 2024
could you make KMC from the toolshed (available Galaxy Australia) also available in usegalaxy.eu? usegalaxy.eu support	24	54	October 14, 2024
Tool wrapping with Hydra config files -- not CLI arguments -- driving the Python code tool-dev	1	86	October 12, 2024
Variant calling with VarScan on WGS data usegalaxy.org support workflow , mapping , tool-help , variant-analysis , varscan	5	19	October 12, 2024
Insecure HTTP method: PUT on my local Galaxy instance galaxy-local	2	5	October 12, 2024
How to get log fold change for individual samples? usegalaxy.org support gtn-tutorial , transcriptomics	4	125	October 11, 2024
Want to retrieve all bacterial sequences from whole genome gtn-tutorial	3	5	October 11, 2024
Error while exporting a history galaxy-local	4	23	October 11, 2024
BBduk filter and trim options tool-help , bbtools_bbduk	2	10	October 10, 2024
Memory quota discrepency account , storage-dashboard	4	8	October 10, 2024
NCBI BLAST+ blastx custom-genome , mapping , tool-help , ncbi_blastx_wrapper	1	8	October 10, 2024
Can users increase the number of threads used for jobs? usegalaxy.eu support mapping	1	7	October 10, 2024
Check for Genes existence in a FASTA file troubleshooting	1	6	October 9, 2024
Unable to unzip file after Downloading Reference genome from NCBI fasta-manipulation	3	14	October 9, 2024
BiG-SCAPE job submission failed usegalaxy.eu support bigscape	3	11	October 9, 2024
reference genome for STARsolo usegalaxy.org support reference-index , custom-genome , transcriptomics , tool-help , rna_starsolo	2	11	October 9, 2024
request for tomato genome version SL4.0 reference-index	7	648	October 9, 2024
Taxonomy-to-Krona tool-help , mothur_taxonomy_to_krona	1	4	October 8, 2024
How to set notification when job/workflow complete? workflow , user-preferences , tool , notifications	2	12	October 8, 2024
Time it takes for a workflow to complete? usegalaxy.be support workflow	4	13	October 7, 2024
Trouble with workflow usegalaxy.org support upload , workflow-extract , troubleshooting	5	12	October 7, 2024
Transcript integrity Number usegalaxy.eu support tool-help , rseqc_tin	3	10	October 7, 2024
Extract nanopore events tool-help , single-cell , poretools_events	1	16	October 7, 2024
How to add SILVA_138.2 latets as a reference to align.seqs tool in GALAXY Server? usegalaxy.org support metagenomics	3	21	October 7, 2024
Inquiry about lettuce genome Resources reference-index , custom-genome , reference-annotation , reference-genome , custom-build , resources	2	7	October 7, 2024
How to get LogFC from Log2(FC) usegalaxy.eu support gtn-tutorial , transcriptomics	3	11	October 7, 2024
Problems using the scratch 1TB usegalaxy.org support account , scratch-space	6	24	October 7, 2024
Can i use galaxy to align genomes and create a phylogetic tree? usegalaxy.org support maf , phylogeny	2	15	October 7, 2024
Need to know the possible sources of duplicate listing of mitochondrial genes resulted by the splitting of sequences in the MITOS output usegalaxy.eu support mitos	2	14	October 5, 2024

What should I do if my data exceeds the given 250GB of storage?

I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?

3

322

August 15, 2024

Troubleshooting resources for errors or unexpected results

share-or-publish , troubleshooting , queued-gray-datasets , resources

How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…

5

10309

April 17, 2024

could you make KMC from the toolshed (available Galaxy Australia) also available in usegalaxy.eu?

usegalaxy.eu support