Galaxy Community Help

Topic	Replies	Views	Activity
FAQ: Create a Qiime2 qza artifact from a Galaxy collection in ONE STEP! Resources gtn-tutorial , collections , resources , tool-help , qiime2 , qiime2_core__tools__import , collection-shape , qiime2_core__tools__import_fastq :partying_face: Try the new QZA creation method! Creating a Qiime2 qza artifact :magic_wand: directly from a Galaxy Collection 1. Create your Galaxy Collection! Single end will have the collection shape List Paired end…	0	175	February 25, 2026
How to access your Self Serve extended data storage at UseGalaxy servers! Resources account , storage-dashboard , resources , scratch-space I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?	1	3022	August 12, 2024
Why collections? Resources news , dataset , collections , resources , collection-shape Collections are one of the super-killer features of Galaxy! By Anton Nekrutenko October 21, 2025	0	322	October 21, 2025
DESeq2 Error: “Duplicate 'row.names' Are Not Allowed” When Using miRDeep2 Quantifier Output usegalaxy.org support mirna , deseq2	1	14	October 26, 2026
Fatal error with MetaPhlAn Uncategorized tool-help , metaphlan	4	50	October 26, 2026
PharmCAT (and its VCF preprocessor) usegalaxy.eu support development-tools , tool-help , pharmcat	1	22	October 26, 2026
Progressive MAUVE usegalaxy.eu support workflow , troubleshooting , collection	1	22	October 26, 2026
Trinity read normalization usegalaxy.eu support transcriptomics	1	24	October 26, 2026
Trinity analysis "too much data" error usegalaxy.org support trinity	1	17	October 26, 2026
BiG-SCAPE on Galaxy Europe: Pfam-A.hmm not found Uncategorized	0	9	October 26, 2026
GROMACS Energy Minimization job stuck in NEW state usegalaxy.eu support	0	7	October 26, 2026
Thermo Orbitrap RAW files to mzML for DDA label-free proteomics usegalaxy.eu support	0	8	October 26, 2026
10x bamtofastq job remains in “new” state since 25 October 2026 usegalaxy.eu support	0	8	October 26, 2026
Confirmed and pending status: Tool "Retrieve bold" is not working : warning message + log usegalaxy.eu support server-open-issue , tool-help , retrieve_bold	3	106	October 26, 2026
Title: 10 out of 63 eggNOG-mapper jobs remain queued in Galaxy Europe usegalaxy.eu support queued-gray-datasets , server-status , tool-help	0	8	October 25, 2026
Mageck MLE stuck for 3 days usegalaxy.eu support mageck_test	0	14	October 24, 2026
Subject: Recover existing Galaxy Main Tool Shed account Uncategorized development-tools	1	25	October 22, 2026
Salmon Jobs Stuck in Queue for Over Two Days – Galaxy US usegalaxy.org support queued-gray-datasets	1	18	October 22, 2026
HISAT2 jobs remain gray / new for approximately 23 hours on usegalaxy.org usegalaxy.org support queued-gray-datasets	1	23	October 22, 2026
Jobs stuck in "queued" state for hours on usegalaxy.org (Filtlong and Seqtk seq) Uncategorized queued-gray-datasets	3	62	October 22, 2026
DIA-NN input error usegalaxy.be support tool-help , diann	1	25	October 22, 2026
Account activation required when uploading datasets Uncategorized	1	19	October 20, 2026
Flye 2.9.6+galaxy0 RAM allocation for a 150 Mb Arabidopsis HiFi pilot (compressed input) usegalaxy.eu support	0	14	October 20, 2026
Assistance Required: VGP5 HiFi and Trio Assembly Failing at the Hifiasm Step. usegalaxy.eu support workflow , troubleshooting	2	39	October 20, 2026
Error in "Align reads and estimate abundance" usegalaxy.org support transcriptomics , trinity_align_and_estimate_abundance	1	30	October 17, 2026
Storage quota increase request – account theo_9800 (usegalaxy.fr) Uncategorized usinggalaxy , storage-dashboard , usegalaxy-fr	1	25	October 17, 2026
ConFindr - cannot find E. coli MLST usegalaxy.eu support tool-help , confindr	1	38	October 16, 2026
Prokka_error_message_Argument “1.7.8” isn’t numeric in numeric 2026 edition Uncategorized	2	36	October 16, 2026
Parabricks fq2bam usegalaxy.eu support tool-help , parabricks_fq2bam	3	47	October 16, 2026
GTDB-TK version 2.4.0 included in my workflow due to a broken latest version 2.7.2 is expiring soon Uncategorized workflow	1	28	October 15, 2026

FAQ: Create a Qiime2 qza artifact from a Galaxy collection in ONE STEP!

gtn-tutorial , collections , resources , tool-help , qiime2 , qiime2_core__tools__import , collection-shape , qiime2_core__tools__import_fastq

:partying_face: Try the new QZA creation method! Creating a Qiime2 qza artifact :magic_wand: directly from a Galaxy Collection 1. Create your Galaxy Collection! Single end will have the collection shape List Paired end…

0

175

February 25, 2026

How to access your Self Serve extended data storage at UseGalaxy servers!

Resources

account , storage-dashboard , resources , scratch-space

I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?