Galaxy Community Help

Topic	Replies	Views	Activity
Troubleshooting resources for errors or unexpected results usegalaxy.org support Check to see if there is a known usegalaxy.* server issue. Server Status: https://status.galaxyproject.org/ If the server was down when you first ran your job, try a rerun once back up. A rerun can also eliminate tra…	2	2266	November 28, 2018
Welcome to Galaxy Community Help	2	1138	November 20, 2018
Test tool shed down? usegalaxy.org support	1	5	July 5, 2020
Please add the Xenopus laevis reference genome to Galaxy! usegalaxy.org support reference-genome	1	4	July 5, 2020
"This is a new dataset and not all of its data are available yet" for 4 hours with trimmomatic troubleshooting , trimmomatic , fastqsangergz , queued-gray-datasets , fastqsanger	4	54	July 4, 2020
Unable to download C. elegans reference genome	1	11	July 4, 2020
Extract Genomic DNA issue with no reference genome available usegalaxy.org support galaxy-local	1	11	July 4, 2020
galaxy input file name changed	1	17	July 3, 2020
Web hook/POST to external URL when job begins and completes running admin , job-config , galaxy-local , cluster	10	40	July 3, 2020
Converting Fastq.gz usegalaxy.org support admin	11	109	July 3, 2020
July 2020 Newsletter: BCC2020! And other cool stuff too. news , jobs , events , release , bcc2020	1	25	July 1, 2020
bcftools call SNP/indel variant calling from VCF/BCF	1	21	July 3, 2020
Keep getting an error when trying to use CANU assembler with Oxford Nanopore reads dataset-collection , fastq , assembly , fastqgz , datatype	5	22	July 2, 2020
Libcrypto error when running samtools admin , galaxy-local , error , samtools	1	24	July 2, 2020
Problem processing Paired end collections with MiniMap2 dataset-collection , fastq , error , mapping , collections	12	70	July 2, 2020
To implement a one-click test in Galaxy. usegalaxy.eu support admin , workflow	3	24	July 2, 2020
Unregistered vs registered accounts in Galaxy usegalaxy.org support account	2	28	July 1, 2020
BWA-MEM not working usegalaxy.org support troubleshooting , mapping , tool-error , bwa-mem , queued-gray-datasets	2	34	July 1, 2020
Subsetting collections and doing operations on an arbitary number of groups usegalaxy.eu support workflow , collections	10	43	July 1, 2020
Release of Galaxy 20.05 workflow , toolshed , release , python3	1	39	June 30, 2020
Extracting sequences from bed file using tools extract Genomic DNA tool and bed to Fasta tool usegalaxy.org support fasta , metadata , custom-genome , bedtools , custom-build	4	42	June 30, 2020
No python virtualenv is available usegalaxy.org support galaxy-local	2	25	June 30, 2020
Galaxy can't find custom blast db usegalaxy.org support	3	24	June 30, 2020
Meaning of DESeq2 Graph 'Dispersion estimates' usegalaxy.eu support rna-seq , deseq2	1	22	June 30, 2020
Salmon - Update request usegalaxy.eu support tool-install , tool-dev , toolshed	4	39	June 29, 2020
Kraken2 missing Kraken databases usegalaxy.org support usegalaxyorg , usegalaxyeu	1	15	June 29, 2020
Trinity - assembly error usegalaxy.org support server-side-error	2	32	June 29, 2020
How to enable SLURM storage accounting on GVL 4.4.0? admin , galaxy-local	1	20	June 28, 2020
StringTie or FeatureCounts usegalaxy.org support rna-seq , stringtie , featurecounts	3	35	June 26, 2020
Error quantifier module of MirDeep2 usegalaxy.eu support input , troubleshooting	3	30	June 26, 2020

Troubleshooting resources for errors or unexpected results

Check to see if there is a known usegalaxy.* server issue. Server Status: https://status.galaxyproject.org/ If the server was down when you first ran your job, try a rerun once back up. A rerun can also eliminate tra…