Galaxy Community Help

Topic	Replies	Views	Activity
How to see the UseGalaxy.eu job queue statistics usegalaxy.eu support queued-gray-datasets , resources I ran multiple RNA STAR jobs over the weekend and only some managed to be completed, two have been stuck on ‘job currently running’ since friday, and the others have been on queue. Was there a problem in the back end? Ho…	2	912	March 5, 2024
FAQ: Create a Qiime2 qza artifact from a Galaxy collection in ONE STEP! Resources gtn-tutorial , collections , resources , tool-help , qiime2 , qiime2_core__tools__import , collection-shape , qiime2_core__tools__import_fastq :partying_face: Try the new QZA creation method! Creating a Qiime2 qza artifact :magic_wand: directly from a Galaxy Collection 1. Create your Galaxy Collection! Single end will have the collection shape List Paired end…	0	192	February 25, 2026
How to access your Self Serve extended data storage at UseGalaxy servers! Resources account , storage-dashboard , resources , scratch-space I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?	1	3062	August 12, 2024
Why collections? Resources news , dataset , collections , resources , collection-shape Collections are one of the super-killer features of Galaxy! By Anton Nekrutenko October 21, 2025	0	325	October 21, 2025
Request for the Chinese hamster genome reference-index usegalaxy.org support reference-index , training	1	13	November 3, 2026
BiG-SCAPE: ask about the Pfam-A.hmm file Uncategorized tool-help , bigscape	1	10	November 3, 2026
Mageck MLE runtime and queue usegalaxy.eu support tool-help , mageck_mle	3	48	November 3, 2026
Long job scheduling delays on usegalaxy.eu usegalaxy.eu support troubleshooting	1	9	November 3, 2026
Upload jobs permanently queued on UseGalaxy.eu Uncategorized	1	12	November 3, 2026
Restore accidentally deleted UseGalaxy.org account usegalaxy.org support account	3	13	November 2, 2026
How to access a datasets with bioproject number BioProject PRJNA1096305 usegalaxy.be support workflow , transcriptomics , __extract_dataset__	1	18	November 2, 2026
DESeq2 Error: “Duplicate 'row.names' Are Not Allowed” When Using miRDeep2 Quantifier Output usegalaxy.org support mirna , deseq2	2	38	October 31, 2026
Repeated Job Pausing and Workflow Interruptions During RNA-seq Analysis usegalaxy.org support	2	21	October 30, 2026
Build expression matrix error usegalaxy.eu support transcriptomics	2	32	October 30, 2026
DESeq2 job remains in “new” state for an extended period usegalaxy.eu support	1	18	October 30, 2026
DIA-NN input error usegalaxy.be support tool-help , diann	4	51	October 30, 2026
Generate gene to transcript map usegalaxy.eu support transcriptomics	1	14	October 30, 2026
BiG-SCAPE on Galaxy Europe: Pfam-A.hmm not found Uncategorized	1	21	October 30, 2026
ConFindr doesn't seem to be able to connect with databases Uncategorized troubleshooting	1	16	October 30, 2026
Trouble when connecting to FTP server usegalaxy.eu support troubleshooting	1	18	October 30, 2026
Galaxy Europe – jobs stuck in "new" state usegalaxy.eu support	3	42	October 30, 2026
GROMACS Energy Minimization job stuck in NEW state usegalaxy.eu support queued-gray-datasets	1	20	October 30, 2026
Thermo Orbitrap RAW files to mzML for DDA label-free proteomics usegalaxy.eu support queued-gray-datasets	1	20	October 30, 2026
Flye assembly resources and recommindations usegalaxy.eu support tool-help , flye	1	35	October 30, 2026
Fatal error with MetaPhlAn Uncategorized tool-help , metaphlan	5	70	October 30, 2026
DEseq2 error with salmon-quant input usegalaxy.eu support transcriptomics	1	17	October 29, 2026
Title: 10 out of 63 eggNOG-mapper jobs remain queued in Galaxy Europe usegalaxy.eu support queued-gray-datasets	1	21	October 29, 2026
10x bamtofastq job remains in “new” state since 25 October 2026 usegalaxy.eu support queued-gray-datasets	1	27	October 28, 2026
PharmCAT (and its VCF preprocessor) usegalaxy.eu support development-tools , tool-help , pharmcat	2	34	October 28, 2026
Error in "Align reads and estimate abundance" usegalaxy.org support transcriptomics , tool-deprecated , trinity_align_and_estimate_abundance	2	53	October 27, 2026

How to see the UseGalaxy.eu job queue statistics

queued-gray-datasets , resources

I ran multiple RNA STAR jobs over the weekend and only some managed to be completed, two have been stuck on ‘job currently running’ since friday, and the others have been on queue. Was there a problem in the back end? Ho…

2

912

March 5, 2024

FAQ: Create a Qiime2 qza artifact from a Galaxy collection in ONE STEP!

Resources

gtn-tutorial , collections , resources , tool-help , qiime2 , qiime2_core__tools__import , collection-shape , qiime2_core__tools__import_fastq

:partying_face: Try the new QZA creation method! Creating a Qiime2 qza artifact :magic_wand: directly from a Galaxy Collection 1. Create your Galaxy Collection! Single end will have the collection shape List Paired end…

0

192

February 25, 2026

How to access your Self Serve extended data storage at UseGalaxy servers!

Resources

account , storage-dashboard , resources , scratch-space

I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?