Topic Replies Views Activity
Troubleshooting resources for errors or unexpected results
usegalaxy.org support

Check to see if there is a known usegalaxy.* server issue. Server Status: https://status.galaxyproject.org/ If the server was down when you first ran your job, try a rerun once back up. A rerun can also eliminate tra…

1 5956 November 28, 2018
Welcome to Galaxy Community Help
1 2567 November 20, 2018
How to run miRNA analysis to identify miRNAs and for differential expression?
usegalaxy.org support
tutorial ,  deseq2 ,  mirna ,  transcriptomics
0 9 October 2, 2022
code 17: slurm_submit_batch_job error in SPAdes
0 8 October 2, 2022
Installed tools not working on galaxy 16.07
usegalaxy.org support
0 14 September 30, 2022
Comparison of RNA-seq data with a published paper.
transcriptomics
1 23 September 30, 2022
FASTQGroomer Error
usegalaxy.org support
fastq ,  qa-qc ,  fastqsanger
2 17 September 30, 2022
Mouse GTF reference annotation
deseq2 ,  transcriptomics ,  reference-annotation ,  gtf
2 24 September 30, 2022
Long run time for RNA Star jobs
public-galaxy-server ,  queued-gray-datasets
1 37 September 29, 2022
empty ABRicate results after conversion to FASTA format
usegalaxy.org support
annotation
5 30 September 29, 2022
EGSEA help - Error in plotHeatMapsLogFC
usegalaxy.org support
input ,  troubleshooting
5 305 September 29, 2022
Static content does not apper in the galaxy welcome
admin
3 41 September 29, 2022
Modify GTF datasets with select tool
usegalaxy.eu support
rna-seq ,  tutorial ,  qa-qc ,  featurecounts ,  gtf
3 29 September 28, 2022
Output different from Galaxy than when run in R
usegalaxy.org support
2 45 September 28, 2022
Trinity genome-guided assembly produces empty files despite the job being completed successfully
usegalaxy.eu support
tool-dev ,  trinity ,  server-open-issue
7 71 September 28, 2022
FastQC not running
usegalaxy.eu support
queued-gray-datasets
5 78 September 28, 2022
Request to add "Nucleolar localization sequence Detector (NoD)" tool in the galaxy tool lists
usegalaxy.org support
admin
1 22 September 28, 2022
Couldn't annotate any gene Name using Annotate DESeq2/DEXSeq output tables
usegalaxy.eu support
tutorial ,  reference-annotation ,  gtf ,  reference-genome
7 508 September 28, 2022
Fastp not running: Confirmed job delays at UseGalaxy.org 09/23/2022. Solution: allow queued jobs to process
usegalaxy.org support
server-side-delay ,  queued-gray-datasets
7 100 September 27, 2022
Error_data import from Galaxy history into rstudio
usegalaxy.eu support
gie ,  rstudio
2 30 September 27, 2022
Bug trying to install locally galaxy
usegalaxy.org support
admin ,  galaxy-local
5 83 September 27, 2022
FastQC and BWA stalled
usegalaxy.org support
server-side-delay ,  queued-gray-datasets
2 35 September 26, 2022
error due to time limit
input ,  comp-chemistry
3 37 September 26, 2022
LEfSe input file problem
text-manipulation ,  input ,  format ,  lefse
7 1726 September 24, 2022
Unable to login to http://localhost:8080/ after fresh install of Docker and Galaxy Windows 8
usegalaxy.org support
admin ,  galaxy-local
7 502 September 23, 2022
Can I use data based on different genome assemblies?
reference-annotation ,  reference-genome
1 14 September 23, 2022
DEseq2 input format problem
deseq2 ,  transcriptomics
1 19 September 23, 2022
Merge Gromacs Topologies tool not found?
usegalaxy.eu support
comp-chemistry
5 220 September 23, 2022
Galaxy 20.01 error Import failed for an unknown reason.
admin ,  workflow ,  galaxy-local
2 264 September 16, 2022
Running a Hicup Pipeline for a DNAse Hi-C
usegalaxy.eu support
workflow
1 29 September 23, 2022