usegalaxy.org support

Topic	Replies	Views	Activity
Troubleshooting resources for errors or unexpected results Check to see if there is a known usegalaxy.* server issue. Server Status: https://status.galaxyproject.org/ If the server was down when you first ran your job, try a rerun once back up. A rerun can also eliminate tra…	1	4397	November 28, 2018
This place is for Galaxy Main server support and discussion If you have a problem or question regarding usegalaxy.org, create topic here. For other servers please see the list of categories.	1	476	November 26, 2018
Reference genome not in database offered by galaxy - Solution: Use a custom genome fasta , custom-genome , ftp-upload , custom-build	6	87	December 4, 2021
HISAT2 error: fewer reads in file specified with -2 than in file specified with -1 mapping , qa-qc , fastq-deinterlacer , fastq-interlacer	2	18	December 3, 2021
Importing Multiple Workflows from published list to my workflow list share-or-publish , workflow , bioblend , api	1	32	December 3, 2021
metagenome analysis of redundant data	7	12	December 3, 2021
Table count Fatal error: Exit code 1 rna-seq , tutorial	0	12	December 3, 2021
input/output error from BAM to Wiggle. But same files works well in Galaxy Europe! error	0	16	December 2, 2021
Unable to run any new jobs error	0	28	November 29, 2021
Help with error during building an expression matrix public-galaxy-server	1	210	November 29, 2021
Fatal error: Exit code 1 () using Shovill error	1	166	November 28, 2021
Mothur make.biom tool job submission failed tutorial , error , mothur	0	30	November 27, 2021
Spades genome assembly waiting to run for a long time. spades	0	36	November 27, 2021
Do spike-In control normalization of RNAseq on Galaxy platform workflow	1	273	November 24, 2021
waiting to run trinity assembly , trinity	0	40	November 24, 2021
My Maxquant search reported this error.	0	33	November 22, 2021
How to display gene names from gff3.gz file in Jbrowse galaxy-local , jbrowse	1	46	November 19, 2021
Jobs waiting to run - more than an hour queued-gray-datasets	0	53	November 16, 2021
Circos of comparative genome text-manipulation , circos	1	49	November 15, 2021
Paired-end Cutadapt Produces Empty List cutadapt	2	40	November 12, 2021
Does galaxy keeps versions of a workflow. workflow	5	74	November 9, 2021
Tool for merging 2x single-read illumina sequencing files (fastq) into one? text-manipulation	7	48	November 5, 2021
Unable to upload files using FileZilla admin , error	0	28	November 5, 2021
SyntaxError: invalid syntax galaxy-local	3	57	November 4, 2021
Is there anything available to replace the deprecated Genome Diversity tools tool-deprecated , rstudio	5	68	November 4, 2021
In featurecounts I got 69% assigned but count matrix full of zeros usegalaxyorg , tutorial , featurecounts , htseq-count , reference-genome	4	45	November 4, 2021
Too long waiting for collection trimming task then an error message rna-seq , tutorial , error , public-galaxy-server	3	32	November 3, 2021
Circos functional on usegalaxy.eu, but not usegalaxy.org: Pending updated tool install at org tool-install , server-open-issue	1	47	November 3, 2021
SRR dataset not available: Connection drops from NCBI using fastq_dump -- try Upload by URL instead ncbi , upload-by-url	1	61	November 2, 2021
Filtering out non-target organism reads before assembly assembly , mapping , bowtie2	1	47	November 1, 2021

Troubleshooting resources for errors or unexpected results

Check to see if there is a known usegalaxy.* server issue. Server Status: https://status.galaxyproject.org/ If the server was down when you first ran your job, try a rerun once back up. A rerun can also eliminate tra…