usegalaxy.org support

Topic	Replies	Views	Activity
Navigating your data storage: existing data, new data, and different storage space options with screenshots! troubleshooting , storage-dashboard The program has been permanently deleted, but it still occupies 250GB of memory.How should this problem be solved?	3	68	October 27, 2025
This place is for Galaxy Main server support and discussion If you have a problem or question regarding usegalaxy.org, create topic here. For other servers please see the list of categories.	1	1170	November 26, 2018
Error when running molecular docking tool-help	11	56	November 21, 2025
Cluster delays at UseGalaxy.org Nov 19 2025: Resolved. Please allow queued jobs to process! Failures, while unexpected, may be rerun queued-gray-datasets	4	19	November 20, 2025
File remain greyed out	1	9	November 19, 2025
How to use Samtools view for filtered HISAT2 data?	2	17	November 17, 2025
Reference genome using BWA-MEM bwa-mem , reference-genome	4	33	November 11, 2025
Limma not running issue tool-help , limma_voom	1	17	November 10, 2025
Salmon quant error due to high number of threads and excess memory usage tool-help , salmon	1	24	November 10, 2025
MAKER on galaxy runs out of local space troubleshooting , maker	3	39	November 10, 2025
Download and Extract Reads in FASTQ: Troubleshooting Fatal error: Exit code 2 () upload , tool-help , fastq_dump	1	19	November 10, 2025
Upload files stuck in queue upload , queued-gray-datasets	3	41	November 6, 2025
Error when running tool: ModuleNotFoundError: No module named 'pandas'. While pandas is in requirements tool-dev	6	51	November 5, 2025
Troubleshooting: fastq read content and shape. Collections, interlaced/interleaved reads, quality assurance troubleshooting , quality-control , collection	7	70	November 5, 2025
Error using Intersect the intervals of two datasets (Galaxy Version 1.0.0) tool tool-help , gops_intersect_1	2	22	November 3, 2025
Jupyter notebook tutorial - no space left error when importing libraries troubleshooting	4	40	October 30, 2025
Is W4M under maintenance? public-galaxy-server	1	11	October 29, 2025
Jobs keep pausing in upload , troubleshooting	5	58	October 29, 2025
Error loading population file in Stacks: Reference map - Reference-based RAD-seq Tutorial gtn-tutorial , tool-help , stacks2_populations	1	17	October 28, 2025
Suggestions for Reliable Alternative Splicing Workflow in Galaxy? transcriptomics	1	24	October 27, 2025
Download and Extract reads in FASTQ format from NCBI SRA in workflow issue troubleshooting , transcriptomics , tool-help	5	44	October 27, 2025
Data file storage storage-dashboard	6	55	October 21, 2025
Requestion Additional Storage for Academic Project storage-dashboard , scratch-space	3	28	October 21, 2025
This job was killed when Galaxy was restarted. Please retry the job. server-admin , galaxy-local	11	433	October 20, 2025
Using either DESeq2 or limma voom without replicates deseq2 , limma_voom	4	36	October 18, 2025
Upload tool troubleshooting at UseGalaxy.org upload , queued-gray-datasets	1	23	October 17, 2025
Qimme2 tools import issue tool-help	1	10	October 17, 2025
'Extract Pairwise MAF Blocks' unable to detect .maf file maf , tool-help , interval2maf_pairwise1	1	16	October 16, 2025
FeatureCounts creating multiple summary tables featurecounts	1	9	October 15, 2025
An error occurred while executing the tutorial “From peaks to genes” gtn-tutorial , gops_intersect_1	2	17	October 13, 2025