usegalaxy.org support


Topic Replies Views Activity
SPAdes, Unicycler, and Trinity have transitioned to run on the new Bridges-2 supercomputer
unicycler ,  trinity ,  spades

The Bridges-2 Supercomputer at the Pittsburgh Supercomputing Center has recently transitioned into production status and replaced the older Bridges-1 supercomputer where Galaxy’s SPAdes, Unicycler, and Trinity tools prev…

1 40 February 18, 2021
Troubleshooting resources for errors or unexpected results

Check to see if there is a known usegalaxy.* server issue. Server Status: https://status.galaxyproject.org/ If the server was down when you first ran your job, try a rerun once back up. A rerun can also eliminate tra…

1 3080 November 28, 2018
This place is for Galaxy Main server support and discussion

If you have a problem or question regarding usegalaxy.org, create topic here. For other servers please see the list of categories.

1 337 November 26, 2018
fastqc command not found
error
12 63 February 24, 2021
What tools should I use for Dual RNA-SEQ?
rna-seq
2 125 February 25, 2021
Fatal error: Exit code 1 () MultiQC and STAR erros
rna-seq ,  multiqc ,  error ,  rna-star ,  reference-genome
0 16 February 25, 2021
fastqsanger.gz file not recognized in usegalaxy.org
dataset-collection ,  fastq ,  ncbi ,  mapping ,  fastqsangergz
11 610 February 25, 2021
How to interpret non-grouping datasets in an edgeR MDS plot
1 16 February 25, 2021
Channel Catfish (Ictalurus punctatus) Genome Addition
admin
1 22 February 24, 2021
Problems with Launching Galaxy in AWS
cloudman ,  error
5 56 February 22, 2021
hg19 as reference produce bad ordered bams
bam ,  reference-genome
2 44 February 22, 2021
Cuffdiff BAM record error
cufflinks ,  cuffdiff ,  cuffmerge
1 38 February 22, 2021
GEMINI tool not found in my tool shelf
gemini
2 43 February 20, 2021
Delete user account
admin
2 36 February 18, 2021
HISAT2 alignment results in very low in number of mapped reads
custom-genome ,  mapping ,  qa-qc ,  hisat2 ,  reference-annotation
6 78 February 17, 2021
Data upload limit on local Galaxy instance
admin ,  upload ,  galaxy-local
1 52 February 16, 2021
Error in Naive Variant Caller (NVC) in usegalaxy.org -- Resolved
variant ,  database ,  custom-genome ,  usegalaxy ,  custom-build
7 63 February 15, 2021
MiModd variant calling
variant ,  error
1 31 February 15, 2021
usegalaxy.org's job concurrency limits and maximum allowed run times have been decreased in order to ensure enough resources are available to students participating in the GTN Smörgåsbord.
1 51 February 14, 2021
Jbrowse error when I want to visualize the results of SNP
4 169 February 14, 2021
DexSeq runtime problem
0 35 February 13, 2021
Kept seeing "Illegal stran" when using SAM/BAM to count matrix
rna-seq ,  troubleshooting ,  reference-annotation ,  gtf ,  reference-genome
8 51 February 12, 2021
Updating the mouse genome to GRCm39/mm39 on Galaxy
admin ,  error
4 68 February 11, 2021
Can't merge bam output from RNA-star
bam ,  rna-star
3 29 February 11, 2021
Workflow execution stalled
workflow ,  queued-gray-datasets ,  workflow-options
4 63 February 11, 2021
How to use Crossmap vcf tool correctly? I am getting a tool error
error
0 33 February 11, 2021
Cannot run my workflow
workflow
4 233 February 10, 2021
Database error: No alias or index file -- BLAST+
blast ,  server-side-error
5 182 February 8, 2021
Install local galaxy
galaxy-local
2 51 February 8, 2021
ChIPSeeker failing
admin
0 34 February 8, 2021