usegalaxy.org support


Topic Replies Views Activity
The usegalaxy.org FTP service will be decommissioned on August 12, 2022
ftp-upload ,  ftp-download

Due to a number of factors, the usegalaxy.org FTP service will be decommissioned on August 12, 2022. The service was first introduced in 2010 for uploading large data to Galaxy in a time when browser upload functionality…

1 1094 July 14, 2022
Troubleshooting resources for errors or unexpected results

Check to see if there is a known usegalaxy.* server issue. Server Status: https://status.galaxyproject.org/ If the server was down when you first ran your job, try a rerun once back up. A rerun can also eliminate tra…

1 5667 November 28, 2018
This place is for Galaxy Main server support and discussion

If you have a problem or question regarding usegalaxy.org, create topic here. For other servers please see the list of categories.

1 577 November 26, 2018
Error when attempting stringtie assembly: no reference transcripts found. Using WBcel235 from NCBI
0 18 August 5, 2022
Login in issue in GALAXY USA
admin
0 19 August 4, 2022
Job is waiting to run for over an hour
admin ,  fastqc ,  error
4 74 August 3, 2022
Missing tool - Metilene
tool-error
0 28 August 3, 2022
I could't find the reference genome that I want
error
0 33 August 2, 2022
Error running Count.seqs
0 33 August 2, 2022
Ensembl FTP doesn't work
error
2 189 August 1, 2022
C. elegans genome version update
rna-star
0 33 August 1, 2022
filter bam datasets on a variety of attributes (with tag)
admin
0 32 August 1, 2022
outMultimapperOrder in STAR alignment
1 43 August 1, 2022
Issues with data format and running HiSat2
error
6 65 July 30, 2022
Troubleshooting an error (exit code 1) when performing BWA-MEM2 on WGS data
custom-genome ,  troubleshooting ,  wgs ,  public-galaxy-server ,  bwa-mem
2 53 July 29, 2022
job in queue 72+ hours
input ,  queued-gray-datasets
1 54 July 29, 2022
Gene count file was empty after Stringtie
stringtie
0 38 July 28, 2022
usegalaxy.org server access
server-status
1 49 July 27, 2022
the way microorganisms are named affect the final results of lefse
text-manipulation ,  troubleshooting ,  lefse ,  galaxy-huttenhower
6 57 July 27, 2022
I run featurecounts on BAM files produced by HISAT (gff file was also annotated in HISAT).But after featurecounts when I try to run deseq/annotatemyIDs/limma, I get an error
admin ,  error
0 30 July 27, 2022
Job fail in one element of the list stops the whole pipelin
0 35 July 25, 2022
Bam input file is not available for the training session 'Calling variants in diploid systems'
tutorial ,  galaxy-local
4 96 July 23, 2022
star fusion validation failure
input ,  troubleshooting
3 881 July 23, 2022
Trouble downloading and unzipping data
fastqc ,  download ,  curl ,  wget ,  server-open-issue
3 51 July 22, 2022
the way features are named affect the final results of lefse
text-manipulation ,  troubleshooting ,  lefse
2 39 July 21, 2022
Error in generating plot using plotFingerprint
0 34 July 20, 2022
Phinch for data visualization
tutorial ,  error
0 36 July 20, 2022
circular RNA identification
8 387 July 19, 2022
Bedgraph to Bigwig converter
4 76 July 19, 2022
No output of STAR Fusion in galaxy
error
0 48 July 16, 2022