usegalaxy.org support

Topic	Replies	Views	Activity
Troubleshooting resources for errors or unexpected results Check to see if there is a known usegalaxy.* server issue. Server Status: https://status.galaxyproject.org/ If the server was down when you first ran your job, try a rerun once back up. A rerun can also eliminate tra…	1	6199	November 28, 2018
This place is for Galaxy Main server support and discussion If you have a problem or question regarding usegalaxy.org, create topic here. For other servers please see the list of categories.	1	623	November 26, 2018
RNAseq data alignment and counting using Salmon	0	16	November 25, 2022
Is gubbins not working?	0	19	November 24, 2022
(unavailable) EGA Download Client: authorized datasets	1	37	November 23, 2022
choosing the right QC option fastqc , filter , cutadapt	1	44	November 23, 2022
Where to get precursor, mature, star miRNA for (MiRDeep2 Quantifier) database , mirna , transcriptomics	1	23	November 23, 2022
clr transformation available for MENAP? workflow	0	17	November 22, 2022
Trimmomatic error: Fatal error text-manipulation , error , trimmomatic	8	80	November 20, 2022
RNA STAR on 2 datasets is running for 4 days and still not complete rna-star , queued-gray-datasets	1	36	November 18, 2022
Setting up an AWS instance of Galaxy - Cloudlaunch application unreachable cloudman , cloudlaunch	0	24	November 18, 2022
Cannot analyze MD simulation using GROMACS - error 127 error	0	23	November 17, 2022
Problems with the tool featureCounts: Fatal error: Exit code 255 () custom-genome , featurecounts , reference-annotation , gtf , reference-genome	4	1150	November 17, 2022
Account not restored yet!! account-deleted	2	222	November 16, 2022
Account marked deleted account-deleted	2	38	November 16, 2022
webapp galaxy/tools data_fetch.py not inheriting LD_LIBRARY_PATH admin	3	67	November 16, 2022
Differential Expression from Salmon Quant outputs without GTF/GFF3 annotation file deseq2	3	43	November 16, 2022
DEseq Error: some values in assay are negative	3	1913	November 16, 2022
Need reference genome for Danio rerio for using HISAT2 reference-genome	1	23	November 16, 2022
blastp not completing	1	33	November 14, 2022
Cannot open file with UCSC Genome Browser: Resolved admin , ucsc , server-open-issue	2	84	November 14, 2022
After Trim galore!, fastqc show the seuqence length is 20-151 rna-seq , qa-qc , rna-star , fastqsanger	1	31	November 11, 2022
CVMFS Error on DESeq2 deseq2 , server-side-error	1	39	November 11, 2022
how to analyse differential gene expression for denovo data rna-seq , tutorial	1	55	November 11, 2022
RESOLVED: Upload tool on the website: 11/8/2022 UseGalaxy.org confirmed data loading failures upload	5	88	November 9, 2022
RESOLVED: usegalaxy.org is super slow: 11/8/2022 Confirmed job delays server-side-delay , queued-gray-datasets	4	133	November 9, 2022
galaxy.org is extremely slow to perform the basic mapping server-side-delay	2	47	November 8, 2022
Flye tool error in galaxy assembly , metagenomics , usegalaxy	1	37	November 8, 2022
Cutadapt and python cutadapt	1	44	November 8, 2022
Troubleshooting with exomedepth	0	33	November 8, 2022

Troubleshooting resources for errors or unexpected results

Check to see if there is a known usegalaxy.* server issue. Server Status: https://status.galaxyproject.org/ If the server was down when you first ran your job, try a rerun once back up. A rerun can also eliminate tra…