usegalaxy.org support

Topic	Replies	Views	Activity
Troubleshooting resources for errors or unexpected results Check to see if there is a known usegalaxy.* server issue. Server Status: https://status.galaxyproject.org/ If the server was down when you first ran your job, try a rerun once back up. A rerun can also eliminate tra…	1	3534	November 28, 2018
This place is for Galaxy Main server support and discussion If you have a problem or question regarding usegalaxy.org, create topic here. For other servers please see the list of categories.	1	403	November 26, 2018
bam2wig.py _ error when converting BAM to Wiggle error	9	40	June 19, 2021
Fixing Errors in Bam Files error	0	14	June 18, 2021
Error executing tool: 'time' error	1	15	June 17, 2021
Help with configuring google cloud storage. cloud	1	40	June 17, 2021
Still need to remove @ from paths in perl script? tutorial , workflow , error	7	78	June 17, 2021
How to use the TPM data from either Stringtie or Sailfish or Killisto quant workflow , stringtie	7	50	June 16, 2021
error in Exomedepth tools tool-dev , error	5	38	June 16, 2021
RNA-STAR and hg38 GTF reference annotation reference-annotation , gtf , hg38 , rna-star	6	3101	October 13, 2020
Cutadapt won't start running -- Datasets and how jobs execute at public Galaxy servers queued-gray-datasets	1	28	June 15, 2021
Trouble with setting up Galaxy API	6	55	June 15, 2021
NCBI SRA Fastq (convert SRA files from GEO into fastq files) metadata , fastq , sra	6	41	June 14, 2021
Converting Transcript Id with Ensemble or Entraz ID ? text-manipulation , goseq	24	2617	June 14, 2021
below 50 percents of reads are assigned in featurecount featurecounts	15	72	June 13, 2021
Multi factor error for DESeq2 deseq2 , edger , limma , rna-star	3	34	June 12, 2021
feature counts vs readspergene.out.tab for DESeq2 count matrix deseq2 , rna-star	3	32	June 11, 2021
Seurat can not save outputs into rds or Rscript ? scrna-seq , rscript	10	192	June 11, 2021
Wrapping a script which implicitly expects a local file tool-dev	5	35	June 10, 2021
Need help in installing galaxy on centos8.1 galaxy-local	3	78	June 10, 2021
Mapping to a uploaded (large) reference genome dataset -- Platform Choices custom-genome , cloudman , gvl , reference-genome , custom-build	14	160	June 9, 2021
Cannot open "display with IGV local D. melanogaster (dm3)" for the tutorial Reference-based RNAseq data analysis (long) tutorial , transcriptomics , igv	8	31	June 8, 2021
transfer a lage maf file to a fasta file tutorial , workflow	1	38	June 7, 2021
too much time for start a job? Troubleshooting Trinity inputs + QA/QC steps for RNA-seq assembly fastqc , trinity , qa-qc , trimmomatic , fastq-deinterlacer	5	257	June 7, 2021
Error in Qualimap RNA-seq QC tool-install , format , server-side-error , gtf , gff3	12	188	June 7, 2021
upload file from FTP, an error occured error	0	29	June 7, 2021
FTP Connecting Using FileZilla 530 Error error , ftp-upload	13	1336	June 6, 2021
Disk Quota Exceeded, approximate resolution time?	3	46	June 6, 2021
Issue in failure resuming paused jobs, in Computematrix. error	6	57	June 6, 2021
Update Request -- Diffbind tool-dev , toolshed , chip-seq	1	54	June 5, 2021

Troubleshooting resources for errors or unexpected results

Check to see if there is a known usegalaxy.* server issue. Server Status: https://status.galaxyproject.org/ If the server was down when you first ran your job, try a rerun once back up. A rerun can also eliminate tra…