Topics tagged troubleshooting

Topic	Replies	Views	Activity
How to get faster help with your question Resources share-or-publish , troubleshooting , resources How to get faster help with your question We can’t help without details! :scientist: Consider Sharing your History or posting screenshots of your Job Information Details page. Confirm the Server URL (your web browser at …	1	1138	May 19, 2026
Navigating your data storage: existing data, new data, and different storage space options with screenshots! Resources troubleshooting , storage-dashboard , resources The program has been permanently deleted, but it still occupies 250GB of memory.How should this problem be solved?	3	276	October 27, 2025
instaGRAAL on usegalaxy.eu finishes as “ok” but all outputs are 0 bytes usegalaxy.eu support assembly , troubleshooting , tool-help	1	11	May 18, 2026
Formatting annotated genomes for submission to NCBI usegalaxy.eu support troubleshooting , ncbi-submission	5	46	May 17, 2026
Java error running interproscan usegalaxy.eu support troubleshooting , interproscan	4	24	May 15, 2026
Problem retrieving data from Apollo troubleshooting , tool-help , apollo , iframe , apollo_iframe , list_organism , feat_from_gff3 , delete_features , fetch_jbrowse	6	14	May 13, 2026
Fastp 1.3.3+galaxy0 error: How do i contact my administrator? Workaround: Use version 1.3.2+galaxy0 instead! usegalaxy.org support troubleshooting , server-open-issue	2	41	May 8, 2026
Barcode Splitter fails consistently - 12K barcodes troubleshooting , cshl_fastx_barcode_splitter	5	39	May 8, 2026
DADA2 tool issues in Galaxy France usegalaxy.eu support troubleshooting , usinggalaxy , usegalaxy-fr	1	28	May 6, 2026
DESeq2 factors and factor level Input usegalaxy.eu support troubleshooting , transcriptomics , tool-help , deseq2	4	40	May 5, 2026
Issue with edgeR results for endometrial dataset usegalaxy.eu support troubleshooting , transcriptomics	3	27	April 30, 2026
Issue with extracting datasets from unzipped files containing .gitkeep files usegalaxy.eu support troubleshooting , tool-help , unzip , zip-explorer	7	66	April 30, 2026
Samtools index not visible in galaxy troubleshooting , datatype	1	19	April 29, 2026
Panaroo error - missing dependancies? usegalaxy.org.au support troubleshooting , tool-help , panaroo	9	118	April 27, 2026
Hosting to UCSC with Custom Builds usegalaxy.org support galaxy-local , troubleshooting	5	23	April 25, 2026
quality string - read length problems in Cutadapt output usegalaxy.eu support troubleshooting , quality-control	3	341	April 24, 2026
Jobs Stuck processing with a workflow: Using the job cache to rerun workflows with canceled outputs usegalaxy.eu support workflow , troubleshooting , queued-gray-datasets , workflow-options , resources	3	40	April 21, 2026
Problem with falco tool usegalaxy.eu support troubleshooting , usinggalaxy	2	25	April 20, 2026
Very few assigned reads with featureCounts usegalaxy.eu support troubleshooting , mapping	1	22	April 10, 2026
NextDenovo Tool Update usegalaxy.eu support troubleshooting	4	22	April 10, 2026
Gene synthesis oligo design troubleshooting	7	141	April 9, 2026
How to use Falco on a dataset collection usegalaxy.eu support troubleshooting , falco	7	32	April 9, 2026
Issue : file export with data convert (waters connect) usegalaxy.eu support upload , troubleshooting	1	6	April 8, 2026
Problems with roary usegalaxy.eu support troubleshooting	4	1709	April 8, 2026
View Button on Reads usegalaxy.org support troubleshooting , server-open-issue	8	26	April 7, 2026
SPAdes: why and how to use intact Paired End reads, plus production workflows for Bacterial assembly! usegalaxy.eu support assembly , spades , troubleshooting , iwc-workflows	2	20	April 18, 2026
Error in RNA STAR - wrong read ID line format usegalaxy.org support troubleshooting , mapping	2	21	April 1, 2026
Dada2: plotQualityProfile troubleshooting , server-open-issue	9	44	March 31, 2026
Help with FAiled Workflow Invocation usegalaxy.eu support workflow , troubleshooting , humann	7	32	March 31, 2026
Internal Server Error when Extracting Workflow usegalaxy.eu support workflow-extract , troubleshooting	1	18	March 23, 2026

How to get faster help with your question

share-or-publish , troubleshooting , resources

How to get faster help with your question We can’t help without details! :scientist: Consider Sharing your History or posting screenshots of your Job Information Details page. Confirm the Server URL (your web browser at …