Topics tagged server-open-issue

Topic	Replies	Views	Activity
Blast is not returning taxonomy results: Fetch Taxonomic Ranks usegalaxy.eu support mapping , blast , server-open-issue , gi2taxonomy	8	31	February 24, 2026
remuRNA Fatal error: Exit code 127 () usegalaxy.eu support troubleshooting , server-open-issue , remurna	1	11	February 24, 2026
HISAT2 Tool Failing: Guidance for known issue at UseGalaxy.org Feb 9 2026. README usegalaxy.org support server-open-issue , hisat2	2	26	February 10, 2026
Does SAINTexpress-spc actually use the protein length values from the .Prey file? public-galaxy-server , server-open-issue	1	22	January 24, 2026
QuPath is unable to save data usegalaxy.eu support server-open-issue , interactive-tools	4	30	January 23, 2026
Datasets visible in "History size" but not in history usegalaxy.org support server-open-issue	5	26	January 12, 2026
Fatal error in joining two datasets usegalaxy.eu support server-open-issue	5	20	January 7, 2026
Error when running DEseq2 - use version 2.11.40.8+galaxy0 usegalaxy.org support server-open-issue , deseq2	1	30	December 26, 2025
Map with KMA using the parameter "-t_db" is not clear! usegalaxy.eu support server-open-issue , tool-help , kma_map	11	117	November 6, 2025
Is the intersect tool working ? API error troubleshooting , data-manipulation , server-open-issue	3	33	October 4, 2025
Tcode (and other emboss programs) usegalaxy.eu support tool-dev , server-open-issue , tool-help , emboss	9	141	September 29, 2025
MrBayes - no output files found usegalaxy.eu support server-open-issue , tool-help , mrbayes	2	53	September 26, 2025
Repeatexplorer fails on single end input usegalaxy.eu support server-open-issue	13	147	September 25, 2025
Multiple Sequence Alignment is not interactive usegalaxy.eu support troubleshooting , server-open-issue , visualization	2	55	September 2, 2025
NCBI FCS GX fails (but used to run) usegalaxy.org support server-open-issue , ncbi_fcs_gx	4	124	August 6, 2025
Interactive BlobToolKit server-open-issue , tool-help , blobtoolkit , interactive_tool_blobtoolkit	4	96	July 14, 2025
Apollo Create or Update Organism error usegalaxy.eu support server-open-issue , tool-help , apollo	4	99	July 8, 2025
Cannot Preview BAM File on usegalaxy.org – "Unknown or invalid visualization: igv" usegalaxy.org support server-open-issue	6	149	June 12, 2025
Cannot "export history to file" usegalaxy.org support history-transfer , troubleshooting , server-open-issue	12	103	April 3, 2025
Unsharing shared histories usegalaxy.org support share-or-publish , server-open-issue	4	66	March 31, 2025
Gemini database installation crash server-admin , galaxy-local , troubleshooting , server-open-issue	6	65	March 17, 2025
troubles with footprinting tool usegalaxy.eu support server-open-issue , tool-help , footprint	6	87	February 19, 2025
featureCounts Fatal error: Exit code 127 () server-open-issue , featurecounts	6	143	January 8, 2025
PhyloseqR not showed up, not working server-open-issue , tool-help , interactive_tool_phyloseq , microgalaxy	13	153	November 19, 2024
problem with funannotate usegalaxy.eu support reference-index , server-open-issue , funannotate	3	718	June 1, 2023
EMBOSS program no graphic output usegalaxy.org support server-open-issue , emboss	4	49	September 24, 2025
StringeTie Generating Empty Transcript and Gene Counts usegalaxy.org support server-open-issue , stringtie	17	308	September 20, 2024
Updates for Kraken2 databases: Viruses and others reference-index , metagenomics , server-open-issue , kraken2	1	183	September 9, 2024
Map With BWA-MEM not working with one particular reference genome usegalaxy.org support reference-index , server-open-issue	5	261	August 30, 2024
psortb error on usegalaxy.eu usegalaxy.eu support troubleshooting , server-open-issue	10	194	August 2, 2024