Fastp was disabled before the job completed

usegalaxy.org support
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1

I uploaded my fastq data and ran QC. The report showed the data was good enough. But when I ran fastp for adaptor trimming, the tool was disabled before the job completed. It kept showing the same error messages after I reuploated the fastq data.

2

Welcome @TLhelp

Thanks for reporting the issue! Yes, there is a small configuration issue with the brand new wrapper for fastp. → Configration issue fastp 1.3.3+galaxy0 at ORG · Issue #1486 · galaxyproject/usegalaxy-tools · GitHub

We’ll be correcting this but you don’t need to wait! See below for how to navigate tool versions. Please let us know if you have follow up questions! :slight_smile:

Workaround: For anyone who has a fastp job immediately fail with this message

This tool was disabled before the job completed. Please contact your Galaxy administrator.

Please toggle into the earlier version of the tool and try that one instead. → FAQ: Changing the tool version

  • Problematic → fastp fast all-in-one preprocessing for FASTQ files (Galaxy Version 1.3.3+galaxy0)

  • Try instead → fastp fast all-in-one preprocessing for FASTQ files (Galaxy Version 1.3.2+galaxy0)