Topics tagged tool-help

Topic	Replies	Views	Activity
Add Sample to LoFreq VCF file tool-help	2	3	February 1, 2026
Toubleshooting BiG-Scape output usegalaxy.eu support tool-help , bigscape	2	54	January 31, 2026
Editing dependencies for training SNAP ab initio predictor usegalaxy.eu support troubleshooting , tool-help , snap_training	2	16	January 31, 2026
SnpEff eff (version 5.2) usegalaxy.org support troubleshooting , tool-help , snpeff	7	38	January 28, 2026
Filtering VEP annotated VCF file tool-help , bcftools_plugin_split_vep	3	15	January 27, 2026
IQ-TREE concordance factor outputs not collected as separate datasets usegalaxy.eu support tool-help , iqtree	3	33	January 23, 2026
Bedtools Intersect intervals results interpretation usegalaxy.eu support bedtools , tool-help , bedtools_intersectbed	5	28	January 23, 2026
Missing Pfam-A reference data in Galaxy PfamScan reference-index , tool-help , pfamscan	1	11	January 23, 2026
MMPBSA/MMGBSA tool-help usegalaxy.eu support tool-help , mmpbsa_mmgbsa	2	42	January 23, 2026
Dada2: assignTaxonomy and addSpecies tool-help	1	17	January 23, 2026
GffCompare problem producing a combined gtf usegalaxy.eu support tool-help	1	22	January 22, 2026
SnpEff eff - ERROR_CHROMOSOME_NOT_FOUND troubleshooting , tool-help , snpeff	2	5	January 19, 2026
A tool that's not available on Galaxy EU usegalaxy.eu support tool-help	0	26	January 13, 2026
GTDB-Tk Classify genomes tool, no available database? Use Galaxy Version 2.5.2+galaxy1 usegalaxy.org support tool-help , gtdbtk_classify_wf	2	43	January 8, 2026
Edta summary output usegalaxy.eu support annotation , tool-help , edta	2	18	January 5, 2026
Cd-hit doubts if the representative sequences are in the same order as clusters tool-help , cd_hit , format_cd_hit_output	6	69	January 5, 2026
TMHMM 2.0 is outdated, can we add DeepTMHMM? usegalaxy.eu support tool-dev , tool-help , tmhmm_and_signalp	1	26	December 23, 2025
NCBI BLAST+ blastx and blastp cannot work with new nr_2025-12-03 usegalaxy.eu support tool-help , ncbi_blastx_wrapper	1	16	December 23, 2025
LotuS2 Pipeline OTUs/ASVs usegalaxy.org.au support tool-help , lotus2	3	33	December 18, 2025
Qiime2 Import 2025.10 errors: Standardize your fastq sequence names usegalaxy.eu support resources , tool-help , qiime2_core__tools__import	3	52	December 17, 2025
RetroPath2.0 fails to run and retrosynthesis workflow reports missing rpTools dependency usegalaxy.org support workflow , tool-help	1	22	December 16, 2025
Bismark Methyl Extractor with error usegalaxy.eu support tool-help , bismark_methylation_extractor	5	41	December 16, 2025
Where is the Gecko-mgv webpage? usegalaxy.eu support gtn-tutorial , tool-help , gecko	2	22	December 15, 2025
Is PED File necessary if working with data from one person? usegalaxy.org support gtn-tutorial , gemini , tool-help , gemini_load	1	27	December 15, 2025
GROMACS Initial Setup Error usegalaxy.eu support troubleshooting , resources , tool-help , gmx_setup , gromacs	3	45	December 15, 2025
DRAM usage problem usegalaxy.eu support troubleshooting , tool-help , dram_distill , dram_annotate , dram_merge_annotations , dram_strainer , dram_neighborhoods	1	17	December 15, 2025
Manipulate anndata remove keys/fields of the vars usegalaxy.org support tool-help , anndata_manipulate	1	15	December 13, 2025
Why .nwk file showed as .txt file in galaxy usegalaxy.eu support upload , tool-help , codeml	2	12	December 12, 2025
BUSCO error: refseq db not found usegalaxy.org support genome-annotation , resources , tool-help , busco	8	65	December 10, 2025
BBTools: BBduk advanced options usegalaxy.org support tool-help , bbtools_bbduk	5	35	December 10, 2025