Topics tagged tool-help

Topic	Replies	Views	Activity
Annotate IDs for Canis Familiaris annotatemyids , tool-help	1	5	November 13, 2025
Map with minimap2 - paired end reads tool-help , minimap2	1	18	November 11, 2025
Limma not running issue usegalaxy.org support tool-help , limma_voom	1	16	November 10, 2025
Salmon quant error due to high number of threads and excess memory usage usegalaxy.org support tool-help , salmon	1	19	November 10, 2025
Download and Extract Reads in FASTQ: Troubleshooting Fatal error: Exit code 2 () usegalaxy.org support upload , tool-help , fastq_dump	1	18	November 10, 2025
ENA submission receipt: Excel input formatting and troubleshooting usegalaxy.eu support troubleshooting , tool-help , ena_upload	9	67	November 10, 2025
Map with KMA using the parameter "-t_db" is not clear! usegalaxy.eu support server-open-issue , tool-help , kma_map	11	90	November 6, 2025
Using CHM13v2.0 T2T and mm39 gene annotations for RNASeq Analysis usegalaxy.eu support transcriptomics , reference-annotation , reference-genome , tool-help , deseq2 , featurecounts	1	21	November 6, 2025
Request to enable KEGG and Pfam databases for DRAM Annotate on Galaxy Europe tool-help	1	17	November 5, 2025
Cd-hit doubts if the representative sequences are in the same order as clusters tool-help , cd_hit	3	34	November 3, 2025
Error using Intersect the intervals of two datasets (Galaxy Version 1.0.0) tool usegalaxy.org support tool-help , gops_intersect_1	2	22	November 3, 2025
BAM/SAM Mapping Stats mapping , transcriptomics , tool-help , rseqc_bam_stat	1	21	November 3, 2025
Downloading abundance (frequency) table of ASVs usegalaxy.eu support tool-help , qiime2	3	19	November 3, 2025
Cannot match collection types collections , cutadapt , tool-help , rna_star	2	26	November 2, 2025
Error when running molecular docking usegalaxy.org support tool-help	4	35	October 31, 2025
MiRDeep2 Mapper: TAIR10 reference genome usegalaxy.eu support tool-help , rbc_mirdeep2 , rbc_mirdeep2_mapper , rbc_mirdeep2_quantifier	3	38	October 31, 2025
Diamond UniRef90 tool-help , bg_diamond	4	28	October 29, 2025
Error loading population file in Stacks: Reference map - Reference-based RAD-seq Tutorial usegalaxy.org support gtn-tutorial , tool-help , stacks2_populations	1	15	October 28, 2025
Download and Extract reads in FASTQ format from NCBI SRA in workflow issue usegalaxy.org support troubleshooting , transcriptomics , tool-help	5	38	October 27, 2025
Error: Convert GTF to BED12 usegalaxy.eu support tool-help , gtftobed12	1	13	October 27, 2025
Converting fastq to fasta for analysis with ABRicate or AMRFinderPlus usegalaxy.eu support troubleshooting , tool-help , abricate	4	21	October 23, 2025
Removing PCR duplicates in GStacks2, galaxy.eu tool-help , stacks2_denovomap , stacks_denovomap , stacks2_ustacks , stacks_ustacks	3	29	October 23, 2025
Empty Output folder - Vina Docking usegalaxy.eu support comp-chemistry , tool-help , prepare_receptor , autodock_vina , prepare_box , docking , prepare_ligands_for_docking , prepare_ligand	5	27	October 21, 2025
MITOS2, origins of replication tool-help , mitos2	6	39	October 21, 2025
Qimme2 tools import issue usegalaxy.org support tool-help	1	10	October 17, 2025
Issue with obtaining tomtom results from meme-chip usegalaxy.eu support chip-seq , tool-help , meme_chip	4	25	October 16, 2025
'Extract Pairwise MAF Blocks' unable to detect .maf file usegalaxy.org support maf , tool-help , interval2maf_pairwise1	1	15	October 16, 2025
Long RepeatModeler Runtime on Galaxy.eu usegalaxy.eu support queued-gray-datasets , tool-help , repeatmodeler	1	27	October 13, 2025
Kraken2 Database Fungi Resources resources , tool-help , kraken2	4	67	October 13, 2025
RSEM prepare reference usegalaxy.eu support reference-index , tool-help , rsem_prepare_reference	5	61	October 9, 2025