Topics tagged tool-help

Topic	Replies	Views	Activity
Variant calling with VarScan on WGS data usegalaxy.org support workflow , mapping , tool-help , variant-analysis , varscan	5	19	October 12, 2024
BBduk filter and trim options tool-help , bbtools_bbduk	2	10	October 10, 2024
NCBI BLAST+ blastx custom-genome , mapping , tool-help , ncbi_blastx_wrapper	1	8	October 10, 2024
reference genome for STARsolo usegalaxy.org support reference-index , custom-genome , transcriptomics , tool-help , rna_starsolo	2	11	October 9, 2024
Taxonomy-to-Krona tool-help , mothur_taxonomy_to_krona	1	4	October 8, 2024
Transcript integrity Number usegalaxy.eu support tool-help , rseqc_tin	3	10	October 7, 2024
Extract nanopore events tool-help , single-cell , poretools_events	1	16	October 7, 2024
How can i use SILVA_138.2 latets as a reference to align.seqs tool in GALAXY Server? usegalaxy.eu support gtn-tutorial , galaxy-local , metagenomics , reference-annotation , tool-help	2	4	October 4, 2024
KOBAS species database is not available upload , tool-help , kobas_identify , kobas_annotate	4	16	October 1, 2024
Error recognizing FASTQ format for SRR files from NCBI usegalaxy.org support upload , tool-help , fasterq_dump	4	11	September 30, 2024
issues with sortmeNRA usegalaxy.org support transcriptomics , tool-help , bg_sortmerna	1	6	September 27, 2024
Faster Download and Extract Reads in FASTQ and ENA reads are slightly different Resources upload , get-data , datatype , resources , tool-help , fastqc , fastq-format	3	47	September 27, 2024
DEseq2 understanding the log2 fold change usegalaxy.org support resources , tool-help , deseq2	3	24	September 27, 2024
BUSCO Fatal error: Exit code 1 () usegalaxy.eu support tool-help , busco	4	30	September 27, 2024
How does Hifiasm handle sex chromosomes? tool-help , hifiasm	2	5	September 27, 2024
DESeq2 - "invalid 'row.names' length" tool-help , deseq2	1	14	September 26, 2024
Pilon - Custom heap size for the Java Virtual Machine tool-help , pilon	2	6	September 26, 2024
Need help with the dataset error report on MITOS (version 1.1.7) de-novo annotation tool of metazoan mitochondrial genomes usegalaxy.eu support tool-help , mitos	5	21	September 24, 2024
Funannotate databases not available on usegalaxy.org? usegalaxy.org support troubleshooting , tool-help , funannotate , funannotate_annotate , funannotate_predict , funannotate_compare	1	15	September 24, 2024
InterProScan missing indexed at UseGalaxy.fr tool-help , interproscan	3	12	September 23, 2024
StringTie gene count files have different row numbers usegalaxy.eu support transcriptomics , tool-help , stringtie	11	29	September 23, 2024
Download and Extract Reads in BAM troubleshooting , tool-help	1	23	September 19, 2024
Targetfinder encountering error because it "uses more memory than allowed" (I don't think this is true); other strategies? usegalaxy.org support exceeds-memory-error , tool-help , targetfinder	1	2	September 18, 2024
Make custom blastdb for rpstblastn usegalaxy.eu support tool-help , ncbi_makeprofiledb	2	4	September 18, 2024
Multi mapped reads usegalaxy.eu support filter-bam , tool-help , bamfilter	1	15	September 17, 2024
HicDetectLoop bug cleanlab version issue usegalaxy.eu support tool-help , hicexplorer_hicdetectloops	3	122	September 17, 2024
Need help to run Phyloseq in Galaxy to characterize microbial taxa usegalaxy.org.au support tool-help , interactive_tool_phyloseq	2	20	September 17, 2024
MiRDeep2 Quantifier tool-help , rbc_mirdeep2	9	22	September 17, 2024
MultiQC 1.24 does not allow comment lines in custom content usegalaxy.eu support multiqc , tool-help	3	17	September 16, 2024
Need Help with Mapping Genome Skimming Data and Generating Consensus Sequences in Galaxy usegalaxy.eu support mapping , tool-help	1	8	September 16, 2024