Topics tagged tool-help

Topic	Replies	Views	Activity
Is PED File necessary if working with data from one person? usegalaxy.org support gtn-tutorial , gemini , tool-help , gemini_load	1	4	December 15, 2025
GROMACS Initial Setup Error usegalaxy.eu support troubleshooting , resources , tool-help , gmx_setup , gromacs	3	24	December 15, 2025
DRAM usage problem usegalaxy.eu support troubleshooting , tool-help , dram_distill , dram_annotate , dram_merge_annotations , dram_strainer , dram_neighborhoods	1	3	December 15, 2025
Manipulate anndata remove keys/fields of the vars usegalaxy.org support tool-help , anndata_manipulate	1	8	December 13, 2025
Why .nwk file showed as .txt file in galaxy usegalaxy.eu support upload , tool-help , codeml	2	5	December 12, 2025
BUSCO error: refseq db not found usegalaxy.org support genome-annotation , resources , tool-help , busco	8	36	December 10, 2025
BBTools: BBduk advanced options usegalaxy.org support tool-help , bbtools_bbduk	5	13	December 10, 2025
BBduk output matches to file short ref (20mer) several no good match to ref usegalaxy.org support tool-help , bbtools_bbduk	2	8	December 9, 2025
Choosing datafiles for DESeq2 usegalaxy.eu support collections , tags , resources , tool-help , deseq2 , select	3	18	December 9, 2025
HUMAnN database tool? tool-help	2	13	December 8, 2025
Error when running molecular docking usegalaxy.org support tool-help	24	110	December 8, 2025
Clarification on DESeq2 Factor Level Direction in Galaxy usegalaxy.eu support tool-help , deseq2	1	16	December 4, 2025
Using CHM13v2.0 T2T and mm39 gene annotations for RNASeq Analysis usegalaxy.eu support transcriptomics , reference-annotation , reference-genome , tool-help , deseq2 , featurecounts	3	42	December 3, 2025
SplitNCigarReads Tool usegalaxy.eu support gtn-tutorial , tool-dev , gatk4 , tool-help	0	9	December 2, 2025
PaDEL descriptor tool-help	0	7	December 2, 2025
Panaroo error input tool-help , panaroo	1	13	November 27, 2025
MMPBSA/MMGBSA tool-help usegalaxy.eu support tool-help , mmpbsa_mmgbsa	1	26	November 24, 2025
Qiime2 diversity alpha-rarefaction tool-help , qiime2__diversity__alpha	1	16	November 17, 2025
Annotate IDs for Canis Familiaris annotatemyids , tool-help	1	11	November 13, 2025
Map with minimap2 - paired end reads tool-help , minimap2	1	31	November 11, 2025
Limma not running issue usegalaxy.org support tool-help , limma_voom	1	21	November 10, 2025
Salmon quant error due to high number of threads and excess memory usage usegalaxy.org support tool-help , salmon	1	27	November 10, 2025
Download and Extract Reads in FASTQ: Troubleshooting Fatal error: Exit code 2 () usegalaxy.org support upload , tool-help , fastq_dump	1	24	November 10, 2025
ENA submission receipt: Excel input formatting and troubleshooting usegalaxy.eu support troubleshooting , tool-help , ena_upload	9	98	November 10, 2025
Map with KMA using the parameter "-t_db" is not clear! usegalaxy.eu support server-open-issue , tool-help , kma_map	11	98	November 6, 2025
Request to enable KEGG and Pfam databases for DRAM Annotate on Galaxy Europe tool-help , dram_distill , dram_annotate , dram_merge_annotations , dram_strainer , dram_neighborhoods	1	31	November 5, 2025
Cd-hit doubts if the representative sequences are in the same order as clusters tool-help , cd_hit	3	43	November 3, 2025
Error using Intersect the intervals of two datasets (Galaxy Version 1.0.0) tool usegalaxy.org support tool-help , gops_intersect_1	2	23	November 3, 2025
BAM/SAM Mapping Stats mapping , transcriptomics , tool-help , rseqc_bam_stat	1	26	November 3, 2025
Downloading abundance (frequency) table of ASVs usegalaxy.eu support tool-help , qiime2	3	20	November 3, 2025