Hi, I’ve made a vcf file with the “Call variants with LoFreq” tool. Does Galaxy have a tool that can add the Format/Sample columns?
I don’t know of such a tool, but if you can explain your usecase, we might be able to suggest a workaround.
I wanted to run LoFreq on a trio of bam files and then merge them to find variants in one sample and not the others. That’s hard without the sample column.