Topics tagged reference-index

Topic	Replies	Views	Activity
Adding nt_core db to Bracken usegalaxy.eu support reference-index	5	10	January 28, 2025
usegalaxy.eu cufflinks no cached reference data usegalaxy.eu support reference-index	6	18	January 24, 2025
Chlamydomonas genome usegalaxy.org support reference-index	1	9	January 22, 2025
Eukaryote taxonomic classification reference database options usegalaxy.org support reference-index	8	36	January 17, 2025
RSEM prepare reference usegalaxy.eu support reference-index , tool-help , rsem_prepare_reference	3	12	January 16, 2025
ncbi fcs gx database not available in eu but on org reference-index	2	125	January 8, 2025
Kraken 2 core nt database and large amount of unclassified reads? usegalaxy.eu support reference-index , single-cell	6	71	January 8, 2025
Built-in reference genome of domestic water buffalo usegalaxy.org.au support reference-index , reference-annotation , reference-genome	1	7	January 6, 2025
Pharokka Database usegalaxy.eu support reference-index , data-manager	10	670	January 2, 2025
CheckV end to end (Galaxy Version 1.0.3+galaxy0) usegalaxy.eu support reference-index	4	18	December 23, 2024
Not identifying fungi with kraken2 PlusPF database usegalaxy.org support reference-index , kraken2	1	18	December 13, 2024
Kraken2 database reference-index , metagenomics	26	297	December 9, 2024
MAARJAM database usegalaxy.org support reference-index	7	17	November 28, 2024
Bowtie2 reference genome of Goat (Capra Hircus) usegalaxy.org support reference-index , custom-genome , mapping , reference-annotation , reference-genome , custom-build , tool-help , reference-transcriptome , bowtie2	1	12	November 25, 2024
GeNomad database usegalaxy.org support reference-index	5	27	November 22, 2024
Exploring Mothur hits to a SILVA database reference-index , troubleshooting , mothur	1	17	November 11, 2024
Database for Kraken2 usegalaxy.org support reference-index , evolution	10	72	November 8, 2024
Reference annotation for TAIR10 reference-index , reference-annotation , reference-genome , reference-transcriptome	1	41	November 6, 2024
problem with funannotate usegalaxy.eu support reference-index , server-open-issue , funannotate	3	638	June 1, 2023
reference genome for STARsolo usegalaxy.org support reference-index , custom-genome , transcriptomics , tool-help , rna_starsolo	3	32	December 4, 2024
request for tomato genome version SL4.0 reference-index	7	656	October 9, 2024
Inquiry about lettuce genome Resources reference-index , custom-genome , reference-annotation , reference-genome , custom-build , resources	2	33	October 7, 2024
Database missing for GTDB-Tk tool usegalaxy.eu support reference-index	2	24	September 25, 2024
MetaPhlAn Database reference-index , galaxy-local , metagenomics	1	31	September 16, 2024
Optimizing STAR Mapping for Large-Scale Genome Annotation: Managing Memory Overflows in RNA-Seq Workflows workflow , reference-index , galaxy-local , mapping , transcriptomics	6	34	September 10, 2024
Updates for Kraken2 databases: Viruses and others reference-index , metagenomics , server-open-issue , kraken2	1	54	September 9, 2024
Map With BWA-MEM not working with one particular reference genome usegalaxy.org support reference-index , server-open-issue	5	73	August 30, 2024
Diamond BLAST reference database issue reference-index , tool-help , bg_diamond	2	36	August 29, 2024
Remove installed databases reference-index , galaxy-local , data-manager	2	29	August 14, 2024
SICER is not available for the genome. reference-index , custom-genome , reference-genome , custom-build , tool-help , peakcalling_sicer	1	13	August 13, 2024