What are the steps for preprocessing single cell data generated from BD Rhapsody system ?
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2
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14
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May 2, 2025
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This job was terminated because itused more memory than it wasallocated.
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1
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5
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April 25, 2025
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Seurat Read10x_Not able to choose "barcodes.tsv.gz" or "barcode.tsv" for Barcode/cell table papameter,
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1
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10
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April 16, 2025
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How to extract count matrix from BAM files of scRNA-seq experiment in Galaxy Server?
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1
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20
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April 10, 2025
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Integrating Day 0 Controls in a CRISPR Screen Analysis with Mageck: Seeking Advice
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1
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15
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March 21, 2025
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Kraken 2 core nt database and large amount of unclassified reads?
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6
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279
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January 8, 2025
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Determining Primary, Intermediate, and Mature Mitochondrial Transcripts??
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1
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4
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December 9, 2024
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Seurat FilterCells
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2
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40
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November 16, 2024
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Discard parts of sequence not mapped to reference
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2
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19
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October 18, 2024
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Extract nanopore events
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1
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23
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October 7, 2024
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Question about Minimap2 and nanopore reads
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1
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48
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September 17, 2024
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Need help trimming sample barcodes and sequencing adapters
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4
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212
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September 10, 2024
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Map with minimap2
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2
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105
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August 21, 2024
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AnnData Operations - AttributeError: 'DataFrame' object has no attribute 'dtype'
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5
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1115
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August 7, 2024
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Decoupler on AnnData object from Scanpy - task fails
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3
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287
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July 12, 2024
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Interactive CellXgene Environment
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3
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20
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July 9, 2024
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Seurat Export2CellBrowser
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1
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6
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July 8, 2024
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Will Nanopore-related tools be updated to accept pod5 files?
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2
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191
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July 8, 2024
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Need help with single-cell RNA-seq analysis workflows
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4
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288
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June 14, 2024
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RNA STARSolo parameters for 10x 5' data
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5
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166
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May 23, 2024
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Convert RNA STARsolo output to AnnData format
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1
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142
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April 18, 2024
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Question about scRNA-seq Galaxy tutorial
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2
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168
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April 16, 2024
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Base calling minION
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1
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100
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April 9, 2024
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Bowtie 2 and mismatch
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3
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336
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March 25, 2024
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Uploaded RDS files are not visible as input in Seurat tools
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2
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268
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February 20, 2024
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Test post please ignore
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0
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106
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January 11, 2024
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dada2 learnErrors "unavailable"
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1
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478
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December 21, 2023
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DESeq2 with single cell data - do cells from same sample get treated independently during analysis?
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0
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459
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July 9, 2021
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Normalize with scanpy
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1
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796
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December 3, 2023
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Smart-seq2 data analysis
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2
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628
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November 2, 2023
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