Seurat Read10x_Not able to choose "barcodes.tsv.gz" or "barcode.tsv" for Barcode/cell table papameter,

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For Barcode/cell table papameter, I am not able to choose “barcodes.tsv.gz” or “barcode.tsv”. Alternatively “features.tsv.gz” is automatically chosen and no other choice available.

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Hi @chan_Osamu Welcome to GalaxyHelp!!

Please check the format of barcodes.tsv is tabular or tsv. Otherwise, please click on the pencil icon to assign the datatype as tabular.

Btw, we have the latest version of Seurat (5.x) on Galaxy now! Please use those tools instead. Checkout this tutorial: Hands-on: Clustering 3K PBMCs with Seurat / Clustering 3K PBMCs with Seurat / Single Cell

cheers,
Pavan

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