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DESeq2 or EdgeR or Limma without replication
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9
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5029
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February 14, 2025
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Trinity problems? Use rnaSPAdes instead!
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14
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558
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April 13, 2024
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Fastq unavailable -- Tool does not recognize inputs? How to check why
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10
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1158
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November 10, 2023
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FreeBayes variant calling and Snpeff variant annotation
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19
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662
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September 17, 2024
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Visualize with Krona
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12
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245
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August 6, 2025
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Issue with rnaQUAST tool
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27
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164
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August 19, 2025
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ATAC Seq wig to bigwig transformation of MACS2 data
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9
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97
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September 25, 2025
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Troubleshooting resources for errors or unexpected results
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1
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11182
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November 24, 2025
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What should I do if my data exceeds the given 250GB of storage?
I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?
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1
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2052
|
August 12, 2024
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Scheduling recurrent workflows
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8
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222
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March 26, 2024
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Avoid :warning: **Liftover** and try using a **CrossMap** tool instead
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3
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955
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September 25, 2025
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How to get faster help with your question
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2
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969
|
November 24, 2025
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Avoid :warning: **Liftover** and try using a **CrossMap** tool
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3
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730
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September 25, 2025
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How to see the UseGalaxy.eu job queue statistics
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3
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593
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December 5, 2024
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Custom genome + custom build: How to use a genome that is not natively indexed at the server you are working at
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5
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773
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January 30, 2024
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MAF tools in Galaxy: step by step publication with an example shared history
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8
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620
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June 15, 2023
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Usage help -- single end versus paired end BAM options
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5
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668
|
November 10, 2023
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Private Galaxy Servers
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0
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1604
|
September 28, 2023
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Getting Data into Galaxy
Data Upload
Use the Upload tool to load datasets into your history
:arrow_up:
Files from your computer using Choose local files
Files with a public URL using Paste/Fetch data
Files from remote data sources using Choose…
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0
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1560
|
September 29, 2023
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Issue with StringTie Output File when using DESeq2 option
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5
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619
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July 22, 2025
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DEseq2 understanding the log2 fold change
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3
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727
|
September 27, 2024
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Public Galaxy Servers
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0
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1432
|
September 28, 2023
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How to find the reference transcriptome for analysis tools: GRCh38/hg38 example
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3
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711
|
May 16, 2024
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Reference genomes at public Galaxy servers: GRCh38/hg38 example
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0
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1347
|
January 29, 2024
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Trinity and reads "smaller than 25 base pairs"
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2
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686
|
December 20, 2023
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Length of Quality Sequence and Length of read do not match
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1
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700
|
April 18, 2025
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Stringtie invalid escape sequence
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2
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543
|
May 16, 2024
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Error when running DeSeq2: help resources and input strategies
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4
|
404
|
July 22, 2025
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User Account Quotas, Memory and Concurrent jobs at UseGalaxy.eu
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4
|
109
|
April 16, 2025
|
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Account problem
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1
|
295
|
March 18, 2024
|
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SPAdes error -- running out of memory/not enough memory allocated for job
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1
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521
|
June 6, 2024
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Missing "paired" input for fastp tool
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8
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209
|
February 24, 2025
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This job was terminated because it used more memory than it was allocated
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2
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284
|
July 22, 2024
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Error with HTseq RNAseq read count
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1
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345
|
November 17, 2023
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Faster Download and Extract Reads in FASTQ and ENA reads are slightly different
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3
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231
|
September 27, 2024
|
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Assembly statistics in reference based RNA seq analysis_tools
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1
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272
|
September 6, 2023
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Job execution timing and computational resources: any tool, any public Galaxy server
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4
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144
|
July 18, 2024
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How to analyze trimmed reads by Shovill Faster Spades Assembly tool
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2
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168
|
October 31, 2024
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How database assignments are used to access a fasta index: custom genomes, custom builds, server indexes
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2
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163
|
September 17, 2024
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Downloading SnpEff database into history: Create database instead!
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3
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137
|
July 18, 2025
|
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Read normalization
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4
|
115
|
July 22, 2025
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Job delays? How to check your job queues and how to work at multiple public UseGalaxy servers
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6
|
92
|
August 8, 2025
|
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Qiime2 import troubleshooting: Retain original Illumnia file names + use simple list collection
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2
|
79
|
August 8, 2025
|
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Funannotate Predict failure re Permission denied? Choose 1.8.15+galaxy5 instead for now
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4
|
108
|
August 19, 2025
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How to solve problems in edgeR?
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2
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76
|
March 13, 2025
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Allowlist guidence
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7
|
82
|
March 4, 2025
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Quality Control Start Here! multQC issue and guidance?
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1
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165
|
March 3, 2025
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Kraken2 Database Fungi
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4
|
98
|
October 13, 2025
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Need help with the dataset error report on MITOS (version 1.1.7) de-novo annotation tool of metazoan mitochondrial genomes
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5
|
89
|
September 24, 2024
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Correcting errors with NCBI FCS GX Foreign Contamination Screening assembled genomes
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1
|
85
|
July 17, 2025
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