Resources


Topic Replies Views Activity
transcriptomics ,  resources ,  deseq2 ,  edger ,  limma_voom
9 4966 February 14, 2025
metadata ,  igv ,  fastqsanger ,  datatype ,  resources ,  single-cell
10 1131 November 10, 2023
resources ,  tool-help ,  trinity ,  rnaspades
14 495 April 13, 2024
freebayes ,  custom-genome ,  custom-build ,  resources ,  tool-help ,  variant-analysis ,  snpeff ,  snpeff_build_gb
19 600 September 17, 2024
text-manipulation ,  metagenomics ,  tool-help ,  open-tutorial-issue ,  krona-text
12 209 August 6, 2025
transcriptomics ,  tool-help ,  rna_quast
27 90 August 19, 2025
workflow ,  tool-help
9 72 September 25, 2025
share-or-publish ,  troubleshooting ,  queued-gray-datasets ,  resources ,  usegalaxy-fr

How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details ā†’ inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…

0 11109 November 28, 2018
account ,  storage-dashboard ,  resources ,  manage-quota ,  scratch-space ,  usegalaxy-fr

Iā€™m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?

1 1889 August 12, 2024
workflow ,  resources
8 212 March 26, 2024
share-or-publish ,  troubleshooting ,  resources

How to get faster help with your question We love details! :scientist: Consider Sharing your History or posting screenshots of your Job Information Details page. Questions with details attract the fastest replies! Pleas…

0 893 January 12, 2024
liftover ,  resources ,  crossmap
3 935 September 25, 2025
liftover ,  crossmap
3 708 September 25, 2025
queued-gray-datasets ,  resources
3 509 December 5, 2024
fasta-manipulation ,  custom-genome ,  reference-genome ,  custom-build ,  resources
5 734 January 30, 2024
chip-seq ,  mapping ,  transcriptomics ,  epigenetics ,  resources ,  featurecounts
5 637 November 10, 2023
server-admin
0 1554 September 28, 2023
upload
0 1477 September 29, 2023
troubleshooting ,  transcriptomics ,  resources ,  tool-help ,  stringtie
5 587 July 22, 2025
public-galaxy-server ,  usegalaxy-fr
0 1370 September 28, 2023
reference-index ,  custom-genome ,  igv ,  reference-genome ,  resources
0 1282 January 29, 2024
troubleshooting ,  reference-annotation ,  reference-genome ,  resources ,  tool-help ,  reference-transcriptome ,  salmon ,  kallisto_quant
3 633 May 16, 2024
assembly ,  troubleshooting ,  exceeds-memory-error ,  resources ,  tool-help ,  quality-control ,  trinity
2 675 December 20, 2023
resources ,  tool-help ,  deseq2
3 554 September 27, 2024
resources ,  quality-control
1 693 April 18, 2025
resources ,  tool-help ,  stringtie
2 509 May 16, 2024
transcriptomics ,  resources ,  tool-help ,  deseq2
4 366 July 22, 2025
troubleshooting ,  account ,  resources
1 280 March 18, 2024
spades ,  exceeds-memory-error ,  resources
1 484 June 6, 2024
job-config ,  account ,  queued-gray-datasets ,  paused-jobs ,  resources
4 78 April 16, 2025
transcriptomics ,  htseq-count ,  resources ,  rna-seq
1 328 November 17, 2023
tool-dev ,  resources ,  tool-help ,  fastp
8 147 February 24, 2025
picard ,  exceeds-memory-error ,  resources
2 241 July 22, 2024
upload ,  get-data ,  datatype ,  resources ,  tool-help ,  fastqc ,  fastq-format
3 201 September 27, 2024
assembly ,  mapping ,  transcriptomics ,  resources ,  rna-seq ,  deseq2 ,  stringtie ,  rnaspades
1 263 September 6, 2023
fasta-manipulation ,  database ,  reference-index ,  custom-genome ,  galaxy-local ,  troubleshooting ,  custom-build ,  resources
2 155 September 17, 2024
assembly ,  spades ,  resources ,  tool-help ,  shovill
2 150 October 31, 2024
queued-gray-datasets ,  resources
4 114 July 18, 2024
resources ,  snpeff
3 94 July 18, 2025
tool-help ,  mitos
5 74 September 24, 2024
gtn-tutorial ,  workflow ,  resources ,  tool-help ,  ncbi_fcs_gx
1 64 July 17, 2025
resources ,  tool-help ,  deseq2
4 69 July 22, 2025
tool-help ,  limma_voom
1 107 May 2, 2024
text-manipulation ,  troubleshooting ,  resources ,  tool-help ,  edger
2 48 March 13, 2025
reference-index ,  reference-annotation ,  reference-genome ,  resources

:speech_balloon: How to find NCBI Reference data? Q: Where can I find the URL links to a reference genome FASTA, annotation, or GenBank file? A: Use the NCBI Genome Assembly page for the organism of interest ā€” for examp…

0 137 June 12, 2025
troubleshooting ,  mapping ,  reference-annotation ,  reference-genome ,  resources
2 79 February 26, 2025
tool-help ,  qiime2 ,  interactive_tool_phyloseq
2 79 September 17, 2024
upload ,  tool-dev ,  resources
4 58 July 2, 2025
server-admin ,  allowlist ,  resources
7 45 March 4, 2025
spades ,  exceeds-memory-error ,  resources ,  tool-help
2 73 March 17, 2025