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9
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Trinity problems? Use rnaSPAdes instead!
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14
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774
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April 13, 2024
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FreeBayes variant calling and Snpeff variant annotation
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19
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929
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September 17, 2024
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Fastq unavailable -- Tool does not recognize inputs? How to check why
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10
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1230
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November 10, 2023
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Visualize with Krona
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12
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324
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August 6, 2025
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GTN Transcriptomics Hands-on: Genome-wide alternative splicing analysis. Troubleshooting reference data choices!
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27
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331
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August 19, 2025
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ATAC Seq wig to bigwig transformation of MACS2 data
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9
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154
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September 25, 2025
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Troubleshooting resources for errors or unexpected results
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0
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11330
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November 28, 2018
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How to access your Self Serve extended data storage at UseGalaxy servers!
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1
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2510
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August 12, 2024
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Scheduling recurrent workflows
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8
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284
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March 26, 2024
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Avoid :warning: **Liftover** and try using a **CrossMap** tool instead
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3
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969
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September 25, 2025
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2
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1092
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November 24, 2025
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Avoid :warning: **Liftover** and try using a **CrossMap** tool
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3
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756
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September 25, 2025
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3
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725
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December 5, 2024
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MAF tools in Galaxy: step by step publication with an example shared history
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8
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725
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June 15, 2023
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DEseq2 understanding the log2 fold change
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4
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923
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April 8, 2026
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Custom genome + custom build: How to use a genome that is not natively indexed at the server you are working at
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5
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803
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January 30, 2024
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Getting Data into Galaxy
Data Upload
Use the Upload tool to load datasets into your history
:arrow_up:
Files from your computer using Choose local files
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0
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1775
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September 29, 2023
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Usage help -- single end versus paired end BAM options
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5
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718
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November 10, 2023
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0
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1750
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September 28, 2023
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3
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829
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May 16, 2024
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Issue with StringTie Output File when using DESeq2 option
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5
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662
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0
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1574
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September 28, 2023
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Reference genomes at public Galaxy servers: GRCh38/hg38 example
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0
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1534
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January 29, 2024
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Trinity and reads "smaller than 25 base pairs"
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2
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701
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December 20, 2023
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Error when running DeSeq2: help resources and input strategies
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4
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479
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July 22, 2025
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Account problem
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2
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328
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April 8, 2026
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Length of Quality Sequence and Length of read do not match
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1
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713
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April 18, 2025
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Stringtie invalid escape sequence
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2
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564
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May 16, 2024
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SPAdes error -- running out of memory/not enough memory allocated for job
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1
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598
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June 6, 2024
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Missing "paired" input for fastp tool
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8
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280
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February 24, 2025
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This job was terminated because it used more memory than it was allocated
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2
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360
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July 22, 2024
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4
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242
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October 13, 2025
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Faster Download and Extract Reads in FASTQ and ENA reads are slightly different
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3
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269
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September 27, 2024
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Error with HTseq RNAseq read count
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1
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357
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November 17, 2023
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Navigating your data storage: existing data, new data, and different storage space options with screenshots!
The program has been permanently deleted, but it still occupies 250GB of memory.How should this problem be solved?
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3
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246
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October 27, 2025
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Job delays? How to check your job queues and how to work at multiple public UseGalaxy servers
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6
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169
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August 8, 2025
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Read normalization
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4
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195
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July 22, 2025
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Assembly statistics in reference based RNA seq analysis_tools
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1
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295
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September 6, 2023
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Downloading SnpEff database into history: Create database instead!
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3
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207
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July 18, 2025
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Job execution timing and computational resources: any tool, any public Galaxy server
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4
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176
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July 18, 2024
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Allowlist guidence
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7
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138
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March 4, 2025
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How to analyze trimmed reads by Shovill Faster Spades Assembly tool
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2
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223
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October 31, 2024
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5
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154
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March 17, 2026
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BAM index, fasta indexes, display applications, custom genome builds, IGV
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3
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179
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September 22, 2025
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Qiime2 import troubleshooting: Retain original Illumnia file names + use simple list collection
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2
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116
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August 8, 2025
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1
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139
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July 17, 2025
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2
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195
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September 17, 2024
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Quality Control Start Here! multQC issue and guidance?
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1
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234
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March 3, 2025
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How to solve problems in edgeR?
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2
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100
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March 13, 2025
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