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How to get faster help with your question

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When performing CREx analysis on mitochondrial genomes, an error always occurs: "Genomes with unequal gene content found." What could be the reasons for this error?
Goseq tool not working
FastQC per tile sequence quality not being generated
Converting fastq to fasta for analysis with ABRicate or AMRFinderPlus
MultiQC issue creating flat plots
Spider plot error
Colabfold MSA- error
Different Results in CRISPR Screening Tutorial
DADA2 Merge Pairs troubleshooting
Forcefield.itp File not found during gromacs run despite uploading
Qiime2 Import 2025.10 errors: Standardize your fastq sequence names
FreeBayes is not calling Indels
Suggestions for Reliable Alternative Splicing Workflow in Galaxy?
16S-DADA2 problems
Collapse tool question
BUSCO running tool
Error loading population file in Stacks: Reference map - Reference-based RAD-seq Tutorial
Kleborate Error
How to visualize overlaps data?
trimAl_use_inputfiel
Galaxy is taking days to blast one sequence
Jobs keep pausing in
I can not get counts
Trim - Cannot trim to large positions
Download and Extract Reads in FASTQ: Troubleshooting Fatal error: Exit code 2 ()
CheckM lineage_wf
Check Format for running the statistical analysis of Mass spectrometry intensity data
Problem with files waiting to be downloaded
Troubleshooting Snippy memory allocation error
Error in running Spades assembly
Snpeff database run errors
Datasets error and failure in DE analysis for mirna-seq
Salmon quant error due to high number of threads and excess memory usage
Help me with an error with uploading my dataset
"PPanGGOLiN all" error in https://usegalaxy.eu
Kraken2 new Core-nt reference
Is there a way to edit all headers in a BAM file?
protein domain and motif identification
Workflow troubleshooting post release 24.2
Running FeatureCount
An error with Batch_correction tool (for metabolomics data analysis)
Minimap2 Memory Issue with hg38/T2T on Galaxy
SPADes and MEGAHIT memory issues
Is my job still running?
Missing gene id labeling in limma
AquaINFRA OGC API Processes
Introductory Tutorial Genomics & Galaxy: Error on Overlapping Intervals
RNASTAR tool - Stuck for days
Error with running EGSEA
NCBI BLAST+ blastn
blobtoolkit; error in the snail plot
Kraken2 Not supporting the required formats for paired sequencing
Jupyter notebook tutorial - no space left error when importing libraries
Large discrepancies between processing identical files on Org vs EU site
I attempted to run LOTUS2 on the Galaxy server multiple times, but the job failed
Apollo help for Create or Update Organism
QUAST ERROR. Can someone offer guidence?
Generating MD Topology (ACPYPE)
Generating MD Topology (ACPYPE)
Manta tool not working
GATK4 Mutect2 Syntax Error
QUAST ERROR. Can someone offer guidence?
IsoformSwitchAnalyzeR Import Data: Memory Allocation
DESeq2 input is non-featurecounts
eggNOG has been running since 9 April
What should I do to upload the data on LefSe server properly?
MMPBSA/MMGBSA tool-help
Docker error when using Funannotate functional annotation tool
Errors with SortMeRNA tool in galaxy
Need Help with Galaxy LEfSe LDA Step Error
Running Interactive Jupyter Notebook - Galaxy could not be reached
how to constitute input files to use KSNP4?
how to constitute input files to use KSNP4?
SNPEff eff job error
Following tutorial and the Splicing won't convert
Apollo Create or Update Organism error
Map with BWA-MEM
Issues with errors, data expiration, and account synchronization
Issue with rnaQUAST tool
BiG-SCAPE issue
Annotate DESeq2/DEXSeq output table error
Nanoplot qc error
Troubleshooting: Krona Pie chart display
Repeatexplorer fails on single end input
An error occurred while executing the tutorial “From peaks to genes”
assembly with flye
Troubleshooting: fastq read content and shape. Collections, interlaced/interleaved reads, quality assurance
Cd-hit doubts if the representative sequences are in the same order as clusters
Asking about qiime2 tools import
Problem with STARsolo chimeric alignments output as separate tabular junctions in Galaxy
Screening assembled genomes for contamination using NCBI FCS workflow not working
Current issue in running my sequencing files
Filter sequences by ID in the tutorial Understanding Barcodes is not work
Error srnapipe when running analysis
Cant get through bed intersect intervals
Issue with obtaining tomtom results from meme-chip
Lefse error and not run
Qiime2 diversity alpha-rarefaction
Error occurred in dataset while running the workflow
Bismark mapping with Fatal Error exit
Upload tool troubleshooting at UseGalaxy.org
Converting BAM files to FASTQ?
Upload files stuck in queue
Couldnt access .fsta
ENA submission receipt: Excel input formatting and troubleshooting
Kraken2 reference database for shotgun sequencing data
Dada remove sequencing error -> Fatal error: Exit code 139 ()
Is there any technical issue with rnaspades since i have checked the compatibility of the data and that is not issue
MITOS2 error can't run job
Unique insertion sites Calculation from Himar1 C9 based TnSeq
Error in using FastQC in Galaxy EU
Is the intersect tool working ? API error
Troubleshooting failed sequence alignment (Sanger)
GWAS troubleshooting
File remain greyed out
Converting BAM files to FASTQ?
Krona troubleshooting
Troubleshooting: Krona Pie chart display
Not recognizing mothur .tax file
Help me with the error on mem bwa
Empty Output folder - Vina Docking
Manipulate anndata remove keys/fields of the vars
GOEnrichment analysis
Asking for unmapped genes in RNA sequencing via Galaxy
Error when running molecular docking