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Why collections?
Collections are one of the super-killer features of Galaxy!
By Anton Nekrutenko
October 21, 2025
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0
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58
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October 21, 2025
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FAQ: NCBI reference data
:speech_balloon: How to find NCBI Reference data?
Q: Where can I find the URL links to a reference genome FASTA, annotation, or GenBank file?
A: Use the NCBI Genome Assembly page for the organism of interest ā for examp…
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155
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June 12, 2025
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How to get faster help with your question
How to get faster help with your question
We love details! :scientist: Consider Sharing your History or posting screenshots of your Job Information Details page. Questions with details attract the fastest replies!
Pleas…
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0
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934
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January 12, 2024
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What should I do if my data exceeds the given 250GB of storage?
Iām working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?
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1
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1955
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August 12, 2024
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Troubleshooting resources for errors or unexpected results
How to troubleshoot your work in Galaxy, and how to ask for help!
:mag_right: Review your Job Details ā inputs + parameters + logs using the i-icon inside of any dataset.
:mortar_board: Learn with a tutorial and custom…
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11142
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November 28, 2018
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Issues with receiving results from FastQC in MultiQC from several collections of samples
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5
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47
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October 17, 2025
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Kraken2 Database Fungi
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4
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64
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October 13, 2025
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How to find the reference transcriptome for analysis tools: GRCh38/hg38 example
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3
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656
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May 16, 2024
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Kraken2 reference database for shotgun sequencing data
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4
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27
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September 30, 2025
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Collection folder VIDEO: How to create a single or paired end dataset collection folder (shapes and organization)
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3
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33
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September 29, 2025
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How do I use galaxy tools to create a paired end collection folder (data shapes and organization)
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2
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60
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December 3, 2024
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Missing "paired" input for fastp tool
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8
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168
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February 24, 2025
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Assembly statistics in reference based RNA seq analysis_tools
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1
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267
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September 6, 2023
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Avoid :warning: **Liftover** and try using a **CrossMap** tool instead
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3
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942
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September 25, 2025
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This job was terminated because itused more memory than it wasallocated
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1
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58
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April 25, 2025
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Tool 'sra_source' does not exist
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2
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39
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September 23, 2025
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BAM index, fasta indexes, display applications, custom genome builds, IGV
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3
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66
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September 22, 2025
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Asking for unmapped genes in RNA sequencing via Galaxy
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1
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12
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August 25, 2025
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Implement/enable "Manage Your Remote File Sources" on local version of galaxy
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3
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14
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August 24, 2025
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Eukaryote (Fasciola gigantica) assembly
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1
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17
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August 20, 2025
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Help with RNA Star, Featurecounts, and reference annotation choices
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1
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41
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August 19, 2025
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Qiime2 import troubleshooting: Retain original Illumnia file names + use simple list collection
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2
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60
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August 8, 2025
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Job delays? How to check your job queues and how to work at multiple public UseGalaxy servers
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6
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64
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August 8, 2025
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Downloading SnpEff database into history: Create database instead!
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3
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109
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July 18, 2025
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Correcting errors with NCBI FCS GX Foreign Contamination Screening assembled genomes
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1
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73
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July 17, 2025
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Cut and run: MACS2 error
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6
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42
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July 9, 2025
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How can I rename a paired Fastq file?
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4
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54
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June 24, 2025
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Error reported for fgsea - gene set enrichment tool
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1
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29
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May 16, 2025
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Downloading a List with 250+ files and Renaming
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2
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47
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May 6, 2025
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Length of Quality Sequence and Length of read do not match
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1
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697
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April 18, 2025
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