Topics tagged resources

Topic	Replies	Views	Activity
What should I do if my data exceeds the given 250GB of storage? account , resources , manage-quota , scratch-space I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?	3	521	August 15, 2024
Troubleshooting resources for errors or unexpected results share-or-publish , troubleshooting , queued-gray-datasets , resources How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…	5	10415	April 17, 2024
Inquiry about lettuce genome Resources reference-index , custom-genome , reference-annotation , reference-genome , custom-build , resources	2	11	October 7, 2024
Faster Download and Extract Reads in FASTQ and ENA reads are slightly different Resources upload , get-data , datatype , resources , tool-help , fastqc , fastq-format	3	76	September 27, 2024
DEseq2 understanding the log2 fold change usegalaxy.org support resources , tool-help , deseq2	3	61	September 27, 2024
Discrepancy between data analyzed by R and Galaxy Resources troubleshooting , resources	1	17	September 20, 2024
Error when running DeSeq2: help resources and input strategies Resources transcriptomics , resources , tool-help , deseq2	3	108	August 30, 2024
About DESeq2 Errors Resources transcriptomics , resources , deseq2 , featurecounts	2	25	September 17, 2024
Job execution timing and computational resources: any tool, any public Galaxy server Resources queued-gray-datasets , resources	4	40	July 18, 2024
FreeBayes variant calling and Snpeff variant annotation Resources freebayes , custom-genome , custom-build , resources , tool-help , variant-analysis , snpeff , snpeff_build_gb	19	334	September 17, 2024
Correct reference transcriptome for Salmon quant on existing RNASTAR alignments usegalaxy.org support troubleshooting , reference-annotation , reference-genome , resources , reference-transcriptome	3	229	May 16, 2024
Stringtie invalid escape sequence usegalaxy.org support resources , tool-help , stringtie	2	358	May 16, 2024
Issue with StringTie Output File when using DESeq2 option troubleshooting , transcriptomics , resources , tool-help , stringtie	4	414	May 8, 2024
How database assignments are used to access a fasta index: custom genomes, custom builds, server indexes Resources fasta-manipulation , database , reference-index , custom-genome , galaxy-local , troubleshooting , custom-build , resources	2	114	September 17, 2024
Scheduling recurrent workflows workflow , resources	8	168	March 26, 2024
Account problem usegalaxy.eu support troubleshooting , account , resources	1	255	March 18, 2024
How to see the UseGalaxy.eu job queue statistics Resources queued-gray-datasets , resources	2	169	March 5, 2024
Reference genomes at public Galaxy servers: GRCh38/hg38 example Resources reference-index , custom-genome , reference-genome , resources	1	540	January 29, 2024
Custom genome + custom build: How to use a genome that is not natively indexed at the server you are working at usegalaxy.eu support fasta-manipulation , custom-genome , reference-genome , custom-build , resources	5	675	January 30, 2024
How to get faster help with your question share-or-publish , troubleshooting , resources	1	432	April 17, 2024
Error with HTseq RNAseq read count transcriptomics , htseq-count , resources , rna-seq	1	272	November 17, 2023
Usage help -- single end versus paired end BAM options chip-seq , mapping , transcriptomics , epigenetics , resources , featurecounts	5	598	November 10, 2023
About the Resources category Resources resources	0	219	September 28, 2023
fastq unavailable -- Tool does not recognize inputs? How to check why metadata , fastqsanger , datatype , resources , single-cell	10	1062	November 10, 2023
Trinity and reads "smaller than 25 base pairs" Resources assembly , troubleshooting , resources , tool-help , quality-control , trinity	2	631	December 20, 2023

What should I do if my data exceeds the given 250GB of storage?

I’m working on a transciptomics data which will probably exceed the given 250GB data. Is there any possible solution to this? for example increasing my storage?

3

521

August 15, 2024

Troubleshooting resources for errors or unexpected results

share-or-publish , troubleshooting , queued-gray-datasets , resources

How to troubleshoot your work in Galaxy, and how to ask for help! :mag_right: Review your Job Details → inputs + parameters + logs using the i-icon inside of any dataset. :mortar_board: Learn with a tutorial and custom…

5

10415

April 17, 2024

Inquiry about lettuce genome

Resources

reference-index , custom-genome , reference-annotation , reference-genome , custom-build , resources