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Linking mouse gene IDs/name to Encode IDs following Salmon and DESeq analysis
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3
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18
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July 22, 2025
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Trying to create a workflow to analyze my nanopore sequencing data
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2
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127
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July 22, 2025
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Salmonquant didnot work using my Reference transcriptome
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3
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29
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July 22, 2025
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Using the salmon tool I´ve got UCSC ids instead of gene_ids
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3
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28
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July 22, 2025
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Error running EdgeR after StringTie
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3
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29
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September 27, 2024
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Local Galaxy gives Error message when trying to install from Tool Shed
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1
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34
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September 27, 2024
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Anyone else having issues with Salmon Data Manager never installing?
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9
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23
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September 23, 2024
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Reference Genome & Reference Transcriptome as ASCII code!
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3
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45
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August 13, 2024
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DESeq2 Analysis with tximport Output - Matrix Dimension Error
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5
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135
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July 22, 2025
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Where to get human reference annotation in gff3 or gtf format?
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2
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257
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June 27, 2024
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Error with new tool ChewBBACA
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16
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213
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June 17, 2024
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"`CXXABI_1.3.13' not found" when running Salmon
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1
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148
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June 14, 2024
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Correct reference transcriptome for Salmon quant on existing RNASTAR alignments
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3
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551
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May 16, 2024
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Large job running on Salmon quant
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3
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92
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April 30, 2024
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Help with Salmon and edgeR
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3
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648
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July 22, 2025
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How to prepare a transcript-to-gene-ID file after de novo transcriptome assembly with rnaSPAdes?
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1
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266
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January 10, 2024
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Uploading Salmon quant.sf files into DESeq2 with proper format
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1
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1199
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December 21, 2023
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RUVSeq Error 'Fatal error: An undefined error occurred, please check your input carefully and contact your administrator.'
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1
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399
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December 21, 2023
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Getting errors for Salmon
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3
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402
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October 18, 2023
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featureCounts strand setting and impact on DESeq2 results
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3
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1471
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July 22, 2025
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Salmon Output File "Name" column gene id format
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3
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288
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July 25, 2023
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RNA Seq analysis - DESEQ2 no significative p-value/log2(FC)
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1
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377
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July 16, 2023
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Sort status of BAM files after RNA STAR
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2
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622
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May 22, 2023
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Desperate! Salmon-quant to DESEQ2 gives me 0 lines?
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2
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260
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July 22, 2025
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Help on GeneID output
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1
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256
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February 21, 2023
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Salmon output issue: differences in line numbers of Quantification and Gene Quantification output files
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6
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1018
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January 11, 2023
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DGE counts of zero on Limma voom
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8
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751
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December 15, 2022
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An fatal error with DESeq2
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7
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1300
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July 22, 2025
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RNAseq data alignment and counting using Salmon
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5
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2344
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July 22, 2025
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Differential Expression from Salmon Quant outputs without GTF/GFF3 annotation file
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4
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688
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July 22, 2025
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