|
Linking mouse gene IDs/name to Encode IDs following Salmon and DESeq analysis
|
|
2
|
11
|
April 16, 2025
|
|
Trying to create a workflow to analyze my nanopore sequencing data
|
|
1
|
107
|
December 9, 2024
|
|
Salmonquant didnot work using my Reference transcriptome
|
|
2
|
22
|
December 9, 2024
|
|
Using the salmon tool I´ve got UCSC ids instead of gene_ids
|
|
2
|
26
|
December 6, 2024
|
|
Error running EdgeR after StringTie
|
|
3
|
29
|
September 27, 2024
|
|
Local Galaxy gives Error message when trying to install from Tool Shed
|
|
1
|
29
|
September 27, 2024
|
|
Anyone else having issues with Salmon Data Manager never installing?
|
|
9
|
23
|
September 23, 2024
|
|
Reference Genome & Reference Transcriptome as ASCII code!
|
|
3
|
41
|
August 13, 2024
|
|
DESeq2 Analysis with tximport Output - Matrix Dimension Error
|
|
4
|
118
|
July 26, 2024
|
|
Where to get human reference annotation in gff3 or gtf format?
|
|
2
|
229
|
June 27, 2024
|
|
Error with new tool ChewBBACA
|
|
16
|
208
|
June 17, 2024
|
|
"`CXXABI_1.3.13' not found" when running Salmon
|
|
1
|
143
|
June 14, 2024
|
|
Correct reference transcriptome for Salmon quant on existing RNASTAR alignments
|
|
3
|
494
|
May 16, 2024
|
|
Large job running on Salmon quant
|
|
3
|
89
|
April 30, 2024
|
|
Help with Salmon and edgeR
|
|
2
|
635
|
April 17, 2024
|
|
How to prepare a transcript-to-gene-ID file after de novo transcriptome assembly with rnaSPAdes?
|
|
1
|
263
|
January 10, 2024
|
|
Uploading Salmon quant.sf files into DESeq2 with proper format
|
|
1
|
1184
|
December 21, 2023
|
|
RUVSeq Error 'Fatal error: An undefined error occurred, please check your input carefully and contact your administrator.'
|
|
1
|
396
|
December 21, 2023
|
|
Getting errors for Salmon
|
|
3
|
395
|
October 18, 2023
|
|
featureCounts strand setting and impact on DESeq2 results
|
|
2
|
1412
|
July 26, 2023
|
|
Salmon Output File "Name" column gene id format
|
|
3
|
282
|
July 25, 2023
|
|
RNA Seq analysis - DESEQ2 no significative p-value/log2(FC)
|
|
1
|
360
|
July 16, 2023
|
|
Sort status of BAM files after RNA STAR
|
|
2
|
608
|
May 22, 2023
|
|
Desperate! Salmon-quant to DESEQ2 gives me 0 lines?
|
|
1
|
258
|
April 13, 2023
|
|
Help on GeneID output
|
|
1
|
254
|
February 21, 2023
|
|
Salmon output issue: differences in line numbers of Quantification and Gene Quantification output files
|
|
6
|
984
|
January 11, 2023
|
|
DGE counts of zero on Limma voom
|
|
8
|
722
|
December 15, 2022
|
|
An fatal error with DESeq2
|
|
6
|
1286
|
December 2, 2022
|
|
RNAseq data alignment and counting using Salmon
|
|
4
|
2264
|
November 29, 2022
|
|
Differential Expression from Salmon Quant outputs without GTF/GFF3 annotation file
|
|
3
|
679
|
November 16, 2022
|