Topics tagged salmon

Topic	Replies	Views	Activity
Salmon quant error due to high number of threads and excess memory usage usegalaxy.org support tool-help , salmon	1	21	November 10, 2025
How to find the reference transcriptome for analysis tools: GRCh38/hg38 example Resources troubleshooting , reference-annotation , reference-genome , resources , tool-help , reference-transcriptome , salmon , kallisto_quant	3	668	May 16, 2024
Linking mouse gene IDs/name to Encode IDs following Salmon and DESeq analysis Resources transcriptomics , resources , tool-help , salmon	3	44	July 22, 2025
Trying to create a workflow to analyze my nanopore sequencing data usegalaxy.eu support featurecounts , minimap2 , salmon	2	155	July 22, 2025
Salmonquant didnot work using my Reference transcriptome transcriptomics , tool-help , reference-transcriptome , salmon	3	54	July 22, 2025
Using the salmon tool I´ve got UCSC ids instead of gene_ids usegalaxy.eu support salmon	3	41	July 22, 2025
Error running EdgeR after StringTie usegalaxy.org.au support troubleshooting , salmon	3	50	September 27, 2024
Local Galaxy gives Error message when trying to install from Tool Shed galaxy-local , toolshed , salmon	1	49	September 27, 2024
Anyone else having issues with Salmon Data Manager never installing? galaxy-local , salmon	9	53	September 23, 2024
Reference Genome & Reference Transcriptome as ASCII code! upload , fasta-manipulation , datatype , salmon	3	63	August 13, 2024
DESeq2 Analysis with tximport Output - Matrix Dimension Error transcriptomics , deseq2 , salmon	5	180	July 22, 2025
Where to get human reference annotation in gff3 or gtf format? reference-annotation , salmon	2	332	June 27, 2024
Error with new tool ChewBBACA usegalaxy.eu support genome-annotation , salmon	16	241	June 17, 2024
"`CXXABI_1.3.13' not found" when running Salmon usegalaxy.be support mapping , transcriptomics , salmon	1	169	June 14, 2024
Large job running on Salmon quant usegalaxy.org support queued-gray-datasets , collections , salmon	3	110	April 30, 2024
Help with Salmon and edgeR usegalaxy.org support transcriptomics , edger , salmon	3	691	July 22, 2025
How to prepare a transcript-to-gene-ID file after de novo transcriptome assembly with rnaSPAdes? usegalaxy.org support transcriptomics , salmon , rnaspades	1	282	January 10, 2024
Uploading Salmon quant.sf files into DESeq2 with proper format usegalaxy.org support transcriptomics , salmon	1	1221	December 21, 2023
RUVSeq Error 'Fatal error: An undefined error occurred, please check your input carefully and contact your administrator.' usegalaxy.org support troubleshooting , salmon	1	400	December 21, 2023
Getting errors for Salmon usegalaxy.org.au support transcriptomics , salmon	3	417	October 18, 2023
featureCounts strand setting and impact on DESeq2 results usegalaxy.org support transcriptomics , rna-seq , deseq2 , featurecounts , salmon	3	1542	July 22, 2025
Salmon Output File "Name" column gene id format usegalaxy.org support transcriptomics , salmon	3	310	July 25, 2023
RNA Seq analysis - DESEQ2 no significative p-value/log2(FC) usegalaxy.org support workflow , transcriptomics , rna-seq , deseq2 , featurecounts , salmon	1	395	July 16, 2023
Sort status of BAM files after RNA STAR transcriptomics , featurecounts , rna_star , salmon	2	640	May 22, 2023
Desperate! Salmon-quant to DESEQ2 gives me 0 lines? transcriptomics , deseq2 , salmon	2	267	July 22, 2025
Help on GeneID output usegalaxy.org support gtn-tutorial , workflow , salmon	1	265	February 21, 2023
Salmon output issue: differences in line numbers of Quantification and Gene Quantification output files usegalaxy.org support troubleshooting , transcriptomics , reference-annotation , salmon	6	1072	January 11, 2023
DGE counts of zero on Limma voom igv , limma_voom , salmon	8	785	December 15, 2022
An fatal error with DESeq2 usegalaxy.org support transcriptomics , salmon	7	1327	July 22, 2025
RNAseq data alignment and counting using Salmon usegalaxy.org support mapping , transcriptomics , featurecounts , salmon	5	2488	July 22, 2025