I need a link for the human reference transcriptome in gff3 format
Hello @jananis
Gencode is one choice that I know of. It would be a match for the UCSC-sourced human reference genomes indexed at most public Galaxy servers. UCSC also has this data to match the reference annotation they host.
More help
- Correct reference transcriptome for Salmon quant on existing RNASTAR alignments - #2 by jennaj << exact help
- Transcriptomics / Tutorial List
- FAQ: Extended Help for Differential Expression Analysis Tools
- FAQ: Working with GFF GFT GTF2 GFF3 reference annotation
- Reference genomes at public Galaxy servers: GRCh38/hg38 example
Here is the link that I used to download the human reference genome.
https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/genes/