Reference transcriptome

Hi, i am new to galaxy. Could you please explain what is used as reference transcriptome and how to search it. I want to see transcriptome abundance of oryza sativa species

Hi @AG_17_007_P.P.T.Amar

This FAQ covers the content and format details for fasta reference transcriptome and GTF/GFF reference annotation (for most analysis, not just DE). Please let us know if anything is not clear and we can try to help more.

Thank you. I want to know what is used as reference transcriptome?

Hi @AG_17_007_P.P.T.Amar

Did you review the FAQ? It has all the details about what data that file represents, the format details, and how it relates to your other inputs.