I’m pretty sure I glossed over something and therefore caused an issue, but I’ve been trying to use RUVSeq ( Remove Unwanted Variation from RNA-seq data (Galaxy Version 1.26.0+galaxy0)) through inputting Salmon files. I have selected the corresponding files for each factor and made sure to select the Salmon option in the settings. I do believe that the error has something to do with the following:
Error in read.table(tx2gene, header = has_header) :
more columns than column names
Calls: get_deseq_dataset → read.table
Thanks for the help.