Topics tagged variant-analysis

Topic	Replies	Views	Activity
Error in SnpEff version usegalaxy.eu support variant-analysis , snpeff	4	36	March 14, 2026
Bad lineage by Nextclade usegalaxy.eu support reference-index , variant-analysis	2	18	March 6, 2026
DeepVariant error usegalaxy.org support troubleshooting , variant-analysis	3	50	February 3, 2026
Add Sample to LoFreq VCF file gtn-tutorial , tool-help , variant-analysis , lofreq_call , lofreq_filter , lofreq_alnqual , lofreq_viterbi , iwc-workflows	5	43	February 2, 2026
FTDNA BAM to T2T pileup and haplogroup usegalaxy.org.au support workflow , variant-analysis	3	324	September 25, 2025
Issue with "Insert Indel Qualities" Step in Galaxy Training Material after recent upgrade usegalaxy.org support variant-analysis	2	59	July 26, 2025
snippy tutorial - snpeff step variant-analysis , snpeff_build_gb	9	209	June 11, 2025
Human genotype analysis variant-analysis	1	48	May 14, 2025
Compare 16S samples usegalaxy.org.au support variant-analysis , microgalaxy	1	43	April 3, 2025
FreeBayes not working with built-in genome troubleshooting , variant-analysis	3	69	April 2, 2025
Variant calling using snippy usegalaxy.org support variant-analysis , snippy	1	84	March 29, 2025
Haplotype analysis usegalaxy.org support igv , variant-analysis	7	212	March 24, 2025
galaxy training - Calling variants in diploid systems gemini annotation source unavailable usegalaxy.be support gemini , tool-help , variant-analysis	8	141	March 15, 2025
Pooled sequecing as Somatic-Germline analysis usegalaxy.org support variant-analysis	1	36	February 19, 2025
Database?? Human Genealogy usegalaxy.org support variant-analysis , iwc-workflows	1	36	February 18, 2025
SNP density visualization gtn-tutorial , circos , variant-analysis	1	117	February 15, 2025
Cannot access Crispresso2 tool from usegalaxy.org tool-request , variant-analysis , genome-editing , crispr	3	64	February 13, 2025
Troubleshooting Snippy memory allocation error exceeds-memory-error , variant-analysis , snippy	1	109	February 4, 2025
Global change in splicing usegalaxy.org support transcriptomics , igv , variant-analysis	3	118	January 15, 2025
manta SV is generating no output files usegalaxy.eu support tool-help , variant-analysis , manta	1	101	December 21, 2024
false positives and negatives when long reads corrected using short reads usegalaxy.eu support troubleshooting , igv , variant-analysis	2	91	November 20, 2024
I cant visualise any data on my SNPs table troubleshooting , variant-analysis , snippy	2	71	November 7, 2024
MiModD Extract Variant Sites - filtering germline variant-analysis	1	37	November 5, 2024
Variant calling with VarScan on WGS data usegalaxy.org support workflow , mapping , tool-help , variant-analysis , varscan	5	167	October 12, 2024
variant's prediction of pathogenicity usegalaxy.org support gtn-tutorial , variant-analysis	1	53	September 17, 2024
Exome sequencing data analysis for diagnosing a genetic disease: Problem in Finding and reporting plausible causative variants step usegalaxy.org support gtn-tutorial , variant-analysis	7	154	September 5, 2024
Download of free Bayes vcf files not possible in some cases usegalaxy.eu support troubleshooting , variant-analysis	1	28	September 4, 2024
FreeBayes Software Error Report usegalaxy.org support workflow , troubleshooting , variant-analysis	2	51	August 26, 2024
problems with vcftools merge command usegalaxy.org support bcftools , variant-analysis , vcf	2	654	August 9, 2024
Variant annotation and calling tool-help , variant-analysis	1	60	August 8, 2024