I already extract the SNPs and INDELS in haploid genome. As well I have chromosome lengths. Now I want to clear path for SNP and Indel visualization in Circos link track. What are the possible tools and steps to do this plotting?
Hi,
I am not an expert on this topic. However, I want to mention that there is a great resource called the Galaxy Training Network (GTN) which provides tutorials and help on various topics. For example, I searched for the keyword you mentioned (circos) and I found the following results. As you can see there is a tutorial for visualization here and another one here.
Besides, usegalaxy.* have tool recommendations for you that sometimes could be useful. Read more about it here and here.
I hope they can help you to find the best tools to do your research.
Best regards,
Armin
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