BAM file analysis -- Variant analysis tutorials

[camilodecavur]

Hello, short reads have been aligned on the human genome (hg38). Got a few BAM files.
How can they be combined?
How can you find SNP between them?
How can I see the result?
OS- Windows.
Thanks in advance for your reply)

[jennaj]

Hello @camilodecavur

Please see the GTN Tutorials for help with understanding how to perform analysis in Galaxy. Galaxy Training!

If you are new to Galaxy, run through a few of the tutorials under the topic Introduction to Galaxy Analyses. These will run fine at most public Galaxy servers, even if the tutorial is not specifically annotated as being appropriate for that server (for technical reasons).

For variant analysis help, see the tutorials in the topic Variant Analysis. Several of these will require an appropriate Galaxy server. Not all host the same tool set.

More about GTN tutorials:

@jennaj

Galaxy Training Network Tutorials : Some GTN tutorials are appropriate for Galaxy Main and some are not. Where you can run each is noted per tutorial – click on the Galaxy instances gear icon to review the Public Galaxy server choices. If a tutorial is supported by a pre-configured Galaxy Docker training image, instructions for how to get it will be listed below the tutorial listings, per category.

Thanks!