Dear Admin,
I have compared two genomes using minimap2 and I want to visualize the comparison with the help of circos. Please guide me on how I can implement the input file so that it could become easier for two genome visualization.
Waiting for your response.
Thank you
Kind regards,
Sakshi Singh
Hello @Sakshi
Tutorials for using Circos in Galaxy are here: Search Tutorials
You can also search the tool panel within Galaxy using the keyword “circos” to find the circos-specific tools for formatting and similar. You may need to use other intermediate data transformation tools – searching the tool panel with datatype keywords or data manipulation tool names is a good strategy to find those. Usage help is directly on the tool forms.
General usage help (examples + tutorials from the Circos tool author): http://circos.ca/
Please be aware that using Circos within Galaxy should be done at usegalaxy.eu or usegalaxy.org.au right now. Usegalaxy.org is pending a tool wrapper update. Details: Circos functional on usegalaxy.eu, but not usegalaxy.org: Pending updated tool install at org