Topics tagged mapping

Topic	Replies	Views	Activity
My reference genome is not in the list mapping	6	23	January 20, 2026
Error in BWA-mem2 alignment usegalaxy.eu support mapping , bwa_mem2	7	16	January 19, 2026
Request for Custom Bowtie Tool Interface for Human Reference Genome Alignment usegalaxy.org support custom-genome , mapping	1	18	January 6, 2026
Hisat2 Error on Bowtie2 output usegalaxy.org support mapping , fastq_manipulation	15	78	January 5, 2026
"`CXXABI_1.3.13' not found" when running Salmon usegalaxy.be support mapping , transcriptomics , salmon	4	199	December 23, 2025
Error in using Bowtie2 troubleshooting , mapping , collections , resources	2	43	December 18, 2025
Request: Add host-decontamination tool (KneadData) or a comparable tool on Galaxy.eu for human shotgun metagenomics preprocessing usegalaxy.eu support workflow , mapping , tool-request , iwc-workflows , humann	2	85	November 6, 2025
BAM/SAM Mapping Stats mapping , transcriptomics , tool-help , rseqc_bam_stat	1	31	November 3, 2025
Minimap2 accepted formats usegalaxy.eu support mapping , datatype-validation , datatype	1	23	November 3, 2025
Troubleshooting for an error in Galaxy Training Materials "reference based RNA seq data analysis" usegalaxy.org.au support mapping	1	62	October 29, 2025
Bismark mapping with Fatal Error exit usegalaxy.eu support mapping , epigenetics	2	33	October 16, 2025
BWA MEM2 tool troubleshooting mapping , bwa_mem2	5	94	October 8, 2025
blastp against nr database database , mapping , blast , blastp	8	3719	October 4, 2025
Bowtie2 -- Paired end samples? Use a List of Pairs collection! mapping , collections , resources , tool-help , bowtie2	5	122	October 3, 2025
Assembly statistics in reference based RNA seq analysis_tools Resources assembly , mapping , transcriptomics , resources , rna-seq , deseq2 , stringtie , rnaspades	1	285	September 6, 2023
BAM index, fasta indexes, display applications, custom genome builds, IGV Resources custom-genome , mapping , igv , custom-build , resources	3	140	September 22, 2025
RNASTAR tool - Stuck for days usegalaxy.org support mapping , queued-gray-datasets	4	45	September 9, 2025
Running MiRDeep2 with pooled reads from MiRDeep2 Mapper troubleshooting , mapping , mirna , rbc_mirdeep2	4	60	August 28, 2025
Asking for unmapped genes in RNA sequencing via Galaxy troubleshooting , mapping , transcriptomics , resources , rna_star	1	28	August 25, 2025
Mapping against a WGS reference usegalaxy.eu support custom-genome , mapping	3	59	July 1, 2025
Bacterial genome sequence analysis usegalaxy.org support mapping , blast , makeblastdb , tool-help , ncbi_tblastn_wrapper	1	36	June 12, 2025
Data Base not found for Cyanobactria usegalaxy.org support server-admin , galaxy-local , mapping , queued-gray-datasets , tool-help	1	21	May 29, 2025
Help with Samtools gtn-tutorial , mapping , samtools	2	60	May 15, 2025
Large discrepancies between processing identical files on Org vs EU site usegalaxy.eu support workflow , upload , mapping , fastqgz , collections , collection-shape	6	103	May 13, 2025
Bowtie2 Mapping Issues usegalaxy.org support mapping	5	97	May 7, 2025
BBmap Host Removal Problems mapping	4	83	April 10, 2025
Ensembl gene annotation gtf for rat problem with RNA STAR Resources troubleshooting , mapping , reference-annotation , reference-genome , resources	2	131	February 26, 2025
UCSC Reference Genome and GTF Fatal Error no valid exons in the GTF file usegalaxy.eu support custom-genome , mapping , fastq-format-error , ucsc , rna-seq , featurecounts , fastq-format , rna_star	3	183	January 22, 2025
Possible to map reads against multiple separate references at once? usegalaxy.org support mapping	2	57	January 15, 2025
Determining Primary, Intermediate, and Mature Mitochondrial Transcripts?? usegalaxy.org support workflow , mapping , transcriptomics , single-cell	1	26	December 9, 2024