Topics tagged mapping

Topic	Replies	Views	Activity
Mapping of Ambiguous Multi Mapping DNA Reads usegalaxy.org support mapping	6	10	April 7, 2026
Error in RNA STAR - wrong read ID line format usegalaxy.org support troubleshooting , mapping	2	17	April 1, 2026
Ouput unaligned reads into bam file with hisat2 usegalaxy.eu support mapping , transcriptomics , tool-help , hisat2	1	17	March 18, 2026
Bowtie2 mapping output usegalaxy.eu support troubleshooting , mapping	4	19	March 12, 2026
Blast is not returning taxonomy results: Fetch Taxonomic Ranks usegalaxy.eu support mapping , blast , server-open-issue , gi2taxonomy	8	38	February 24, 2026
My reference genome is not in the list mapping	6	29	January 20, 2026
Error in BWA-mem2 alignment usegalaxy.eu support mapping , bwa_mem2	7	22	January 19, 2026
Request for Custom Bowtie Tool Interface for Human Reference Genome Alignment usegalaxy.org support custom-genome , mapping	1	22	January 6, 2026
Hisat2 Error on Bowtie2 output usegalaxy.org support mapping , fastq_manipulation	15	127	January 5, 2026
"`CXXABI_1.3.13' not found" when running Salmon usegalaxy.be support mapping , transcriptomics , salmon	4	212	December 23, 2025
Error in using Bowtie2 troubleshooting , mapping , collections , resources	2	53	December 18, 2025
Request: Add host-decontamination tool (KneadData) or a comparable tool on Galaxy.eu for human shotgun metagenomics preprocessing usegalaxy.eu support workflow , mapping , tool-request , iwc-workflows , humann	2	99	November 6, 2025
BAM/SAM Mapping Stats mapping , transcriptomics , tool-help , rseqc_bam_stat	1	37	November 3, 2025
Minimap2 accepted formats usegalaxy.eu support mapping , datatype-validation , datatype	1	23	November 3, 2025
Troubleshooting for an error in Galaxy Training Materials "reference based RNA seq data analysis" usegalaxy.org.au support mapping	1	72	October 29, 2025
Bismark mapping with Fatal Error exit usegalaxy.eu support mapping , epigenetics	2	36	October 16, 2025
BWA MEM2 tool troubleshooting mapping , bwa_mem2	5	107	October 8, 2025
blastp against nr database mapping , blast , blastp	8	3726	October 4, 2025
Bowtie2 -- Paired end samples? Use a List of Pairs collection! mapping , collections , resources , tool-help , bowtie2	5	141	October 3, 2025
Assembly statistics in reference based RNA seq analysis_tools Resources assembly , mapping , transcriptomics , resources , rna-seq , deseq2 , stringtie , rnaspades	1	295	September 6, 2023
BAM index, fasta indexes, display applications, custom genome builds, IGV Resources custom-genome , mapping , igv , custom-build , resources	3	179	September 22, 2025
RNASTAR tool - Stuck for days usegalaxy.org support mapping , queued-gray-datasets	4	50	September 9, 2025
Running MiRDeep2 with pooled reads from MiRDeep2 Mapper troubleshooting , mapping , mirna , rbc_mirdeep2	4	76	August 28, 2025
Blast issue when trying to add species name: Fetch Taxonomic Ranks usegalaxy.org support mapping , blast , tool-help , gi2taxonomy	4	97	August 25, 2025
Asking for unmapped genes in RNA sequencing via Galaxy troubleshooting , mapping , transcriptomics , resources , rna_star	1	30	August 25, 2025
Mapping against a WGS reference usegalaxy.eu support custom-genome , mapping	3	62	July 1, 2025
Bacterial genome sequence analysis usegalaxy.org support mapping , blast , makeblastdb , tool-help , ncbi_tblastn_wrapper	1	40	June 12, 2025
Help with Samtools gtn-tutorial , mapping , samtools	2	68	May 15, 2025
Large discrepancies between processing identical files on Org vs EU site usegalaxy.eu support workflow , upload , mapping , fastqgz , collections , collection-shape	6	109	May 13, 2025
Bowtie2 Mapping Issues usegalaxy.org support mapping	5	106	May 7, 2025