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FAQ: Create a Qiime2 qza artifact from a Galaxy collection in ONE STEP!
:partying_face: Try the new QZA creation method!
Creating a Qiime2 qza artifact :magic_wand: directly from a Galaxy Collection
1. Create your Galaxy Collection!
Single end will have the collection shape List
Paired end…
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100
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February 25, 2026
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Why collections?
Collections are one of the super-killer features of Galaxy!
By Anton Nekrutenko
October 21, 2025
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227
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October 21, 2025
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qiime2 tools import
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8
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652
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February 25, 2026
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Make.contigs in a list:paired collection
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1
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15
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February 10, 2026
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Addition of several plots to MultiQC
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3
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27
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February 6, 2026
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Splittng Paired End Sequences and MultiQC of Paired Sequences
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4
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65
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February 3, 2026
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Retrieve the names of my samples (element identifier) in a collection so that I can aggregate them with the names of my contigs
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4
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40
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January 9, 2026
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Error in using Bowtie2
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2
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60
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December 18, 2025
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Choosing datafiles for DESeq2
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3
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168
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December 9, 2025
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How do I create and visualize a nested paired list
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1
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28
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November 3, 2025
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Salmon Quant paired-end read entry
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1
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59
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November 3, 2025
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Cannot match collection types
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2
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55
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November 2, 2025
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Download and Extract reads in FASTQ format from NCBI SRA in workflow issue
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5
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278
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October 27, 2025
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FASTQ Paired Reads Splitter?
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3
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71
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October 22, 2025
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Qimme2 tools import issue
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26
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October 17, 2025
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Workflows: job queues and managing partial failures with Resume and Replace!
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79
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October 14, 2025
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Panaroo & PanTA: sample recognition troubleshooting
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4
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181
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October 8, 2025
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Bowtie2 -- Paired end samples? Use a List of Pairs collection!
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5
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177
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October 3, 2025
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Why can’t separate files be used in FASTP? Creating a paired end collection folder (data shapes and organization)
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5
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102
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October 1, 2025
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Collection folder VIDEO: How to create a single or paired end dataset collection folder (shapes and organization)
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88
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September 29, 2025
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How do I use galaxy tools to create a paired end collection folder (data shapes and organization)
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113
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December 3, 2024
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Collection to separate files
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1
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45
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September 22, 2025
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Creating folders/segregate files
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3
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64
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September 3, 2025
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Qiime2 import troubleshooting: Retain original Illumnia file names + use simple list collection
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2
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124
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August 8, 2025
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Alleyoop - unable to select dataset collections for bam, tsv, and vcf files
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3
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45
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August 5, 2025
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Concatenate multiple datasets tool; combining all fastq.gz files under a single barcode to one fastq.gz file
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6
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308
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July 22, 2025
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Random failures when concatenating fastqsanger.gz datasets via collection– "Not in GZIP format" errors
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2
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74
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July 22, 2025
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How can I rename a paired Fastq file?
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4
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100
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June 24, 2025
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Extract dataset
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1
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60
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June 12, 2025
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Format issues while trying yo use rnaviralspades
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2
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49
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June 11, 2025
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