Topics tagged tool-help

Topic	Replies	Views	Activity
BWA-MEM2 input file naming usegalaxy.org support custom-genome , igv , tool-help , bwa_mem2	1	5	February 12, 2026
Qiime2 Import 2025.10 errors: Standardize your fastq sequence names usegalaxy.eu support resources , tool-help , qiime2_core__tools__import	6	75	February 11, 2026
Extract Genomic DNA error box usegalaxy.eu support resources , tool-help , bedtools_getfastabed , extract-genomic-dna-1 , extract_genomic_dna	8	27	February 9, 2026
HUMAnN-setting-error usegalaxy.eu support tool-help , humann	1	9	February 7, 2026
Distance Analysis - time series using MDAnalysis (Galaxy Version 1.0.0+galaxy0) tool inputs usegalaxy.eu support troubleshooting , comp-chemistry , tool-help , mdanalysis_distance	2	16	February 5, 2026
Text reformatting - outdated link tool-help , tp_awk_tool	5	49	February 5, 2026
A tool that's not available on Galaxy EU usegalaxy.eu support tool-help	1	44	February 4, 2026
IT fails to start usegalaxy.org support tool-help	2	19	February 4, 2026
Toubleshooting BiG-Scape output usegalaxy.eu support tool-help , bigscape	3	60	February 3, 2026
Add Sample to LoFreq VCF file gtn-tutorial , tool-help , variant-analysis , lofreq_call , lofreq_filter , lofreq_alnqual , lofreq_viterbi , iwc-workflows	5	17	February 2, 2026
GROMACS simulation thread allocation usegalaxy.eu support tool-help , gromacs	1	10	February 2, 2026
SnpEff eff (version 5.2) usegalaxy.org support troubleshooting , tool-help , snpeff	7	41	January 28, 2026
Filtering VEP annotated VCF file tool-help , bcftools_plugin_split_vep	3	18	January 27, 2026
IQ-TREE concordance factor outputs not collected as separate datasets usegalaxy.eu support tool-help , iqtree	3	36	January 23, 2026
Bedtools Intersect intervals results interpretation usegalaxy.eu support bedtools , tool-help , bedtools_intersectbed	5	31	January 23, 2026
Missing Pfam-A reference data in Galaxy PfamScan reference-index , tool-help , pfamscan	1	12	January 23, 2026
MMPBSA/MMGBSA tool-help usegalaxy.eu support tool-help , mmpbsa_mmgbsa	2	45	January 23, 2026
Dada2: assignTaxonomy and addSpecies tool-help	1	18	January 23, 2026
GffCompare problem producing a combined gtf usegalaxy.eu support tool-help	1	22	January 22, 2026
SnpEff eff - ERROR_CHROMOSOME_NOT_FOUND troubleshooting , tool-help , snpeff	2	7	January 19, 2026
GTDB-Tk Classify genomes tool, no available database? Use Galaxy Version 2.5.2+galaxy1 usegalaxy.org support tool-help , gtdbtk_classify_wf	2	52	January 8, 2026
Edta summary output usegalaxy.eu support annotation , tool-help , edta	2	22	January 5, 2026
Cd-hit doubts if the representative sequences are in the same order as clusters tool-help , cd_hit , format_cd_hit_output	6	74	January 5, 2026
TMHMM 2.0 is outdated, can we add DeepTMHMM? usegalaxy.eu support tool-dev , tool-help , tmhmm_and_signalp	1	28	December 23, 2025
NCBI BLAST+ blastx and blastp cannot work with new nr_2025-12-03 usegalaxy.eu support tool-help , ncbi_blastx_wrapper	1	18	December 23, 2025
LotuS2 Pipeline OTUs/ASVs usegalaxy.org.au support tool-help , lotus2	3	37	December 18, 2025
RetroPath2.0 fails to run and retrosynthesis workflow reports missing rpTools dependency usegalaxy.org support workflow , tool-help	1	26	December 16, 2025
Bismark Methyl Extractor with error usegalaxy.eu support tool-help , bismark_methylation_extractor	5	56	December 16, 2025
Where is the Gecko-mgv webpage? usegalaxy.eu support gtn-tutorial , tool-help , gecko	2	26	December 15, 2025
Is PED File necessary if working with data from one person? usegalaxy.org support gtn-tutorial , gemini , tool-help , gemini_load	1	27	December 15, 2025