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Request for higher-memory resource for RSEM v1.3.1 due to OOM
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2
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15
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August 11, 2026
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Stringtie help related to GTF file for zebrafish genome
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2
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26
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July 28, 2026
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lncRNA pipeline using GENCODE files
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2
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42
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July 20, 2026
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ChiRa for Chimeric eClip data processing - Split ChiRa collapse out put as files to large processing
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1
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37
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July 6, 2026
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DEseq2: Interpreting 3 or more factor levels
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1
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37
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July 6, 2026
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How to set the reference level in DESeq2 for treatment vs control comparison?
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1
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25
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July 6, 2026
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DESeq2 factors and factor level Input
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4
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79
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May 5, 2026
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Issue with edgeR results for endometrial dataset
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3
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40
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April 30, 2026
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Issue at RNA-STAR step: adjusting GTF annotation
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3
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62
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April 22, 2026
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Fatal error: using trinity
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2
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945
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April 18, 2026
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Error with de novo assembly using Trintiy
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5
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438
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April 18, 2026
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Improve genome annotation with RNA-Seq data
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1
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560
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April 8, 2026
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Custom PCA plot in Deseq2
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3
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598
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April 8, 2026
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cummeRbund tool tutorials guide
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1
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20
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April 6, 2026
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GoSeq GO analysis importing a gene categories file
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1
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30
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April 1, 2026
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Ouput unaligned reads into bam file with hisat2
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1
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33
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March 18, 2026
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EdgeR shows 0 dataset
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1
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13
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March 1, 2026
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Transcriptomics in Galaxy: Overview, Guides, Production Workflows
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3
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46
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February 18, 2026
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ChIP sequencing
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1
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25
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February 16, 2026
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Generating tx2gene map and filtering for rnaSPAdes (de novo)
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3
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60
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January 31, 2026
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Gene and transcript level quant using salmon
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4
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127
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January 8, 2026
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"`CXXABI_1.3.13' not found" when running Salmon
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3
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228
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December 23, 2025
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GO enrichment on up and down regulated genes on treated sample
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1
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93
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December 15, 2025
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Workflow cannot be executed Uncaught exception in exposed API method
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1
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46
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December 9, 2025
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How to perform quality trimming without adapter removal in Cutadapt?
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1
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55
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December 8, 2025
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GWAS troubleshooting
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3
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66
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December 4, 2025
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Genome wide alternate splicing analysis - IsoformSwitchAnalyzeR error from StringTie input - no CDS
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9
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332
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August 7, 2024
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Using CHM13v2.0 T2T and mm39 gene annotations for RNASeq Analysis
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3
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212
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December 3, 2025
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Is a "?" in featureCounts' database field a problem when using a non-built-in genome?
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1
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66
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November 24, 2025
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miRNA alignment on Bowtie2/miRDeep
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1
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66
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November 15, 2025
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