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Help with FAiled Workflow Invocation
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7
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30
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March 31, 2026
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Change data type in a workflow
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1
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14
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March 26, 2026
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Concatenate multiple datasets on a zipped collection : cannot connect workflow
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1
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9
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March 23, 2026
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Workflow extraction issue
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11
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1310
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March 20, 2026
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Problem on Picrust2 webtool, even with tutorial files
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10
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842
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February 12, 2026
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"Uncaught exception in exposed API method:" When starting workflows or selecting tools
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1
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18
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January 12, 2026
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Error on: CFSAN SNP Pipeline
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1
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15
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December 24, 2025
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RetroPath2.0 fails to run and retrosynthesis workflow reports missing rpTools dependency
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1
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31
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December 16, 2025
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Workflow cannot be executed Uncaught exception in exposed API method
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1
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32
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December 9, 2025
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Invocation scheduling failed - Galaxy administrator may have additional details in logs
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6
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81
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November 19, 2025
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Request: Add host-decontamination tool (KneadData) or a comparable tool on Galaxy.eu for human shotgun metagenomics preprocessing
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2
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99
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November 6, 2025
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Issues with receiving results from FastQC in MultiQC from several collections of samples
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6
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124
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March 17, 2026
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Rerunning only failed jobs in a workflow: Replace and Resume functions
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4
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169
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October 16, 2025
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Basic eDNA worklow
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6
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152
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October 7, 2025
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FTDNA BAM to T2T pileup and haplogroup
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4
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294
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September 25, 2025
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This is the legacy workflow run form. One or more tools in this workflow have required inputs that are not connected to other steps. The simplified form cannot handle disconnected runtime inputs
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1
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60
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September 22, 2025
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MultiQC Fastqc problems
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1
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14
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September 22, 2025
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Job delays? How to check your job queues and how to work at multiple public UseGalaxy servers
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6
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169
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August 8, 2025
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Optional steps in workflow can't be connected to one another
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2
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101
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August 7, 2025
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Problem with STARsolo chimeric alignments output as separate tabular junctions in Galaxy
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1
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36
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August 5, 2025
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HiCUP Runtime and Tool Recommendations for Hi-C Analysis
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1
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39
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August 5, 2025
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ATAC Seq wig to bigwig transformation of MACS2 data
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9
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154
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September 25, 2025
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Correcting errors with NCBI FCS GX Foreign Contamination Screening assembled genomes
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1
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139
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July 17, 2025
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Remove save tags for history and workflow annotation
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1
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56
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July 10, 2025
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Issues Modifying Existing Workflow from SE to PE
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1
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48
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July 1, 2025
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Build expression matrix (RSEM) troubleshooting
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1
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55
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June 25, 2025
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miRBase/RNAseq/EGSEA
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2
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554
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June 14, 2025
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Batch input workflow - how to send jobs to distinct histories?
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2
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50
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July 24, 2025
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ATAC-seq and chromatin accessibity IGV view
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0
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77
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June 6, 2025
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Workflow invoked but is not scheduling steps
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3
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74
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May 22, 2025
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