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Does using the same gtf file for RNA Star and featureCounts cause problems?
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1
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39
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June 24, 2026
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Extracting data from a .gff3 file
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3
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56
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May 18, 2026
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Genome update sus scro: how to use a custom genome!
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2
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84
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February 19, 2026
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Rat Featurecount Selection
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2
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55
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January 28, 2026
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Using CHM13v2.0 T2T and mm39 gene annotations for RNASeq Analysis
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3
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280
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December 3, 2025
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How to find the reference transcriptome for analysis tools: GRCh38/hg38 example
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3
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1033
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May 16, 2024
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Help with RNA Star, Featurecounts, and reference annotation choices
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1
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245
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August 19, 2025
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Newly launched BN rat genome assembly GRCr8 into the reference genome list?
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1
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60
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August 5, 2025
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Adding a New Reference Genome for Cannabis sativa
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1
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69
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July 29, 2025
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FAQ: NCBI reference data
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0
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417
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June 12, 2025
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Want to add a new organism for HISAT2 analysis
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1
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50
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June 12, 2025
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BRAKER3 fails with 'Genemark not installed' error
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1
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197
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May 5, 2025
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RUVSeq:Fatal error: An undefined error occurred, please check your input carefully and contact your administrator
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1
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49
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April 18, 2025
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Getting NCBI Reference genome indexed for tools: custom genome, reference genome, reference annotation
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10
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251
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March 14, 2025
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Ensembl gene annotation gtf for rat problem with RNA STAR
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2
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192
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February 26, 2025
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Request to upload/add new version of reference genome of Aedes albopictus (Genome assembly AalbF5)
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1
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58
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February 19, 2025
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Custom reference genome annotation
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5
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1300
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February 14, 2025
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How to select a different reference genome from that already present using the tool RNA-STAR
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2
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77
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February 10, 2025
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FEELnc troubleshooting
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5
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251
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February 10, 2025
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I can not get counts
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5
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123
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January 31, 2025
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Feature count on exon level instead gene level
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3
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248
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January 28, 2025
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How to get galaxy to call transcript types from gene symbols?
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1
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56
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January 15, 2025
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Built-in reference genome of domestic water buffalo
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1
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94
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January 6, 2025
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Bowtie2 reference genome of Goat (Capra Hircus)
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1
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63
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November 25, 2024
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Reference annotation for TAIR10
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1
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259
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November 6, 2024
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Gene ID's being filtered out in ChipSeq analysis
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5
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118
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November 4, 2024
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Feature counts built-in annotation file - no options available
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2
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277
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October 28, 2024
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Inquiry about lettuce genome
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2
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148
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October 7, 2024
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How can i use SILVA_138.2 latets as a reference to align.seqs tool in GALAXY Server?
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1
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70
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October 4, 2024
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Genes from my reference genome are not annotated in output files. Trying to get read count per gene/abundant gene list
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1
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47
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October 1, 2024
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