I’m trying the RNA seq tutorial - reads to counts.
I’ve done the Hisat2 mapping and am trying to do the counting
I selected the feature counts tool
and selected featurecounts built in for the annotation files
But it says no options available
I need the mm10 annotation file
             
            
               
               
               
            
            
           
          
            
            
              Here’s a link to my history
             
            
               
               
               
            
            
           
          
            
              
                wm75  
                
               
              
                  
                    October 28, 2024,  8:03am
                   
                   
              3 
               
             
            
              Hi @Ken_Saville , 
same issue reported just a bit earlier here: Tool update: featureCounts · Issue #6445 · galaxyproject/tools-iuc · GitHub 
While this is getting fixed, you can do what Teresa suggests there: 
Set the Gene annotation file to → featureCounts built-in first, only then select the input collection.
Sorry for the inconvenience, 
Wolfgang
             
            
               
               
              1 Like