I’m trying the RNA seq tutorial - reads to counts.
I’ve done the Hisat2 mapping and am trying to do the counting
I selected the feature counts tool
and selected featurecounts built in for the annotation files
But it says no options available
I need the mm10 annotation file
Here’s a link to my history
wm75
October 28, 2024, 8:03am
3
Hi @Ken_Saville ,
same issue reported just a bit earlier here: Tool update: featureCounts · Issue #6445 · galaxyproject/tools-iuc · GitHub
While this is getting fixed, you can do what Teresa suggests there:
Set the Gene annotation file
to → featureCounts built-in
first, only then select the input collection.
Sorry for the inconvenience,
Wolfgang
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