Feature counts built-in annotation file - no options available

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1

I’m trying the RNA seq tutorial - reads to counts.

I’ve done the Hisat2 mapping and am trying to do the counting

I selected the feature counts tool

and selected featurecounts built in for the annotation files

But it says no options available

I need the mm10 annotation file

2

Here’s a link to my history

3

Hi @Ken_Saville,
same issue reported just a bit earlier here: Tool update: featureCounts · Issue #6445 · galaxyproject/tools-iuc · GitHub

While this is getting fixed, you can do what Teresa suggests there:
Set the Gene annotation file to → featureCounts built-in first, only then select the input collection.

Sorry for the inconvenience,
Wolfgang