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Gene and transcript level quant using salmon
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4
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51
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January 8, 2026
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"`CXXABI_1.3.13' not found" when running Salmon
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4
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212
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December 23, 2025
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Salmon quant error due to high number of threads and excess memory usage
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1
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41
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November 10, 2025
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How to find the reference transcriptome for analysis tools: GRCh38/hg38 example
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3
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822
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May 16, 2024
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Linking mouse gene IDs/name to Encode IDs following Salmon and DESeq analysis
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3
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79
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July 22, 2025
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Trying to create a workflow to analyze my nanopore sequencing data
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2
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197
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July 22, 2025
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Salmonquant didnot work using my Reference transcriptome
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3
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95
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July 22, 2025
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Using the salmon tool I´ve got UCSC ids instead of gene_ids
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3
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65
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July 22, 2025
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Error running EdgeR after StringTie
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3
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71
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September 27, 2024
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Local Galaxy gives Error message when trying to install from Tool Shed
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2
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71
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March 17, 2026
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Anyone else having issues with Salmon Data Manager never installing?
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10
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93
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March 17, 2026
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Reference Genome & Reference Transcriptome as ASCII code!
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3
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123
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August 13, 2024
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DESeq2 Analysis with tximport Output - Matrix Dimension Error
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5
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257
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July 22, 2025
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Where to get human reference annotation in gff3 or gtf format?
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2
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410
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June 27, 2024
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Error with new tool ChewBBACA
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16
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327
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June 17, 2024
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Large job running on Salmon quant
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3
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124
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April 30, 2024
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Help with Salmon and edgeR
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3
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720
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July 22, 2025
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How to prepare a transcript-to-gene-ID file after de novo transcriptome assembly with rnaSPAdes?
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1
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309
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January 10, 2024
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Uploading Salmon quant.sf files into DESeq2 with proper format
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1
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1255
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December 21, 2023
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RUVSeq Error 'Fatal error: An undefined error occurred, please check your input carefully and contact your administrator.'
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1
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419
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December 21, 2023
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Getting errors for Salmon
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3
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442
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October 18, 2023
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featureCounts strand setting and impact on DESeq2 results
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3
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1636
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July 22, 2025
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Salmon Output File "Name" column gene id format
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3
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344
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July 25, 2023
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RNA Seq analysis - DESEQ2 no significative p-value/log2(FC)
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1
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413
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July 16, 2023
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Sort status of BAM files after RNA STAR
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2
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671
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May 22, 2023
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Desperate! Salmon-quant to DESEQ2 gives me 0 lines?
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2
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281
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July 22, 2025
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Help on GeneID output
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1
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296
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February 21, 2023
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Salmon output issue: differences in line numbers of Quantification and Gene Quantification output files
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6
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1170
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January 11, 2023
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DGE counts of zero on Limma voom
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8
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867
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December 15, 2022
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An fatal error with DESeq2
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7
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1379
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July 22, 2025
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