Topics tagged salmon

Topic	Replies	Views	Activity
Gene and transcript level quant using salmon usegalaxy.org support troubleshooting , transcriptomics , salmon	4	40	January 8, 2026
"`CXXABI_1.3.13' not found" when running Salmon usegalaxy.be support mapping , transcriptomics , salmon	4	209	December 23, 2025
Salmon quant error due to high number of threads and excess memory usage usegalaxy.org support tool-help , salmon	1	37	November 10, 2025
How to find the reference transcriptome for analysis tools: GRCh38/hg38 example Resources troubleshooting , reference-annotation , reference-genome , resources , tool-help , reference-transcriptome , salmon , kallisto_quant	3	809	May 16, 2024
Linking mouse gene IDs/name to Encode IDs following Salmon and DESeq analysis Resources transcriptomics , resources , tool-help , salmon	3	79	July 22, 2025
Trying to create a workflow to analyze my nanopore sequencing data usegalaxy.eu support featurecounts , minimap2 , salmon	2	194	July 22, 2025
Salmonquant didnot work using my Reference transcriptome transcriptomics , tool-help , reference-transcriptome , salmon	3	93	July 22, 2025
Using the salmon tool I´ve got UCSC ids instead of gene_ids usegalaxy.eu support salmon	3	65	July 22, 2025
Error running EdgeR after StringTie usegalaxy.org.au support troubleshooting , salmon	3	71	September 27, 2024
Local Galaxy gives Error message when trying to install from Tool Shed galaxy-local , toolshed , salmon	1	70	September 27, 2024
Anyone else having issues with Salmon Data Manager never installing? galaxy-local , salmon	9	92	September 23, 2024
Reference Genome & Reference Transcriptome as ASCII code! upload , fasta-manipulation , datatype , salmon	3	119	August 13, 2024
DESeq2 Analysis with tximport Output - Matrix Dimension Error transcriptomics , deseq2 , salmon	5	254	July 22, 2025
Where to get human reference annotation in gff3 or gtf format? reference-annotation , salmon	2	404	June 27, 2024
Error with new tool ChewBBACA usegalaxy.eu support genome-annotation , salmon	16	321	June 17, 2024
Large job running on Salmon quant usegalaxy.org support queued-gray-datasets , collections , salmon	3	124	April 30, 2024
Help with Salmon and edgeR usegalaxy.org support transcriptomics , edger , salmon	3	720	July 22, 2025
How to prepare a transcript-to-gene-ID file after de novo transcriptome assembly with rnaSPAdes? usegalaxy.org support transcriptomics , salmon , rnaspades	1	307	January 10, 2024
Uploading Salmon quant.sf files into DESeq2 with proper format usegalaxy.org support transcriptomics , salmon	1	1250	December 21, 2023
RUVSeq Error 'Fatal error: An undefined error occurred, please check your input carefully and contact your administrator.' usegalaxy.org support troubleshooting , salmon	1	419	December 21, 2023
Getting errors for Salmon usegalaxy.org.au support transcriptomics , salmon	3	439	October 18, 2023
featureCounts strand setting and impact on DESeq2 results usegalaxy.org support transcriptomics , rna-seq , deseq2 , featurecounts , salmon	3	1624	July 22, 2025
Salmon Output File "Name" column gene id format usegalaxy.org support transcriptomics , salmon	3	340	July 25, 2023
RNA Seq analysis - DESEQ2 no significative p-value/log2(FC) usegalaxy.org support workflow , transcriptomics , rna-seq , deseq2 , featurecounts , salmon	1	413	July 16, 2023
Sort status of BAM files after RNA STAR transcriptomics , featurecounts , rna_star , salmon	2	667	May 22, 2023
Desperate! Salmon-quant to DESEQ2 gives me 0 lines? transcriptomics , deseq2 , salmon	2	281	July 22, 2025
Help on GeneID output usegalaxy.org support gtn-tutorial , workflow , salmon	1	294	February 21, 2023
Salmon output issue: differences in line numbers of Quantification and Gene Quantification output files usegalaxy.org support troubleshooting , transcriptomics , reference-annotation , salmon	6	1162	January 11, 2023
DGE counts of zero on Limma voom igv , limma_voom , salmon	8	862	December 15, 2022
An fatal error with DESeq2 usegalaxy.org support transcriptomics , salmon	7	1374	July 22, 2025