Topics tagged deseq2

Topic	Replies	Views	Activity
Error when running DEseq2 - use version 2.11.40.8+galaxy0 usegalaxy.org support server-open-issue , deseq2	1	31	December 26, 2025
Choosing datafiles for DESeq2 usegalaxy.eu support collections , tags , resources , tool-help , deseq2 , select	3	107	December 9, 2025
Clarification on DESeq2 Factor Level Direction in Galaxy usegalaxy.eu support tool-help , deseq2	1	53	December 4, 2025
Using CHM13v2.0 T2T and mm39 gene annotations for RNASeq Analysis usegalaxy.eu support transcriptomics , reference-annotation , reference-genome , tool-help , deseq2 , featurecounts	3	100	December 3, 2025
Lfc shrinkage in DESeq2? usegalaxy.org support tool-dev , deseq2	1	14	December 2, 2025
DESeq2 error: an error occurred with this dataset usegalaxy.eu support deseq2	4	38	December 2, 2025
Using either DESeq2 or limma voom without replicates usegalaxy.org support deseq2 , limma_voom	4	86	October 18, 2025
Assembly statistics in reference based RNA seq analysis_tools Resources assembly , mapping , transcriptomics , resources , rna-seq , deseq2 , stringtie , rnaspades	1	291	September 6, 2023
Problems regarding file upload in DeSeq2 usegalaxy.org support tool-help , deseq2	6	131	April 15, 2025
Latest DESeq2 version (2.11.40.8+galaxy0) gives different result than earlier versions tool-version , transcriptomics , deseq2	3	115	February 26, 2025
DESeq2 for multiple groups usegalaxy.eu support deseq2 , limma_voom	2	225	February 20, 2025
DESeq2 or EdgeR or Limma without replication Resources transcriptomics , resources , deseq2 , edger , limma_voom	9	5088	February 14, 2025
DESeq2 output file column heading missing tool-help , deseq2	1	97	February 14, 2025
Read normalization Resources resources , tool-help , deseq2	4	174	July 22, 2025
DESeq2 input is non-featurecounts transcriptomics , deseq2	1	48	January 14, 2025
Dseq2 tool error deseq2	2	47	November 30, 2024
DEseq2 understanding the log2 fold change Resources resources , deseq2	3	880	September 27, 2024
DESeq2 - "invalid 'row.names' length" tool-help , deseq2	1	252	September 26, 2024
DESeq2, using "age" as a continuous variable tool-help , deseq2	2	678	September 5, 2024
Error when running DeSeq2: help resources and input strategies Resources transcriptomics , resources , tool-help , deseq2	4	469	July 22, 2025
About DESeq2 Errors Resources transcriptomics , resources , deseq2 , featurecounts	2	80	September 17, 2024
Ajusting batches from different experiments in DESeq2 analysis transcriptomics , tool-help , deseq2	1	47	August 6, 2024
DESeq2 error using data from tcga downloaded using r tool-help , deseq2	1	60	August 2, 2024
DESeq2 Analysis with tximport Output - Matrix Dimension Error transcriptomics , deseq2 , salmon	5	254	July 22, 2025
Interpreting Reference/Primary Factor Group for DeSeq2 results usegalaxy.org support transcriptomics , deseq2	4	180	July 17, 2024
Deseq2 output 0 lines deseq2	6	127	July 22, 2025
Deseq2 differential expression analysis transcriptomics , annotatemyids , tool-help , deseq2 , featurecounts	2	174	July 22, 2025
Is there a need to include 2nd factor if there's only paired reads in the dataset for DeSeq2? usegalaxy.org support deseq2	4	281	February 21, 2024
DESeq2 with likelihood ratio test usegalaxy.org support deseq2	0	156	January 4, 2024
Time for Running RNA Seq Workflow usegalaxy.org support mapping , transcriptomics , queued-gray-datasets , deseq2 , stringtie	1	320	December 1, 2023