DESeq2 output file column heading missing

What are the colum headings for the deseq 2 output results

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Welcome @Anupam89

If you scroll all the way down on the DESeq2 tool form, into the Help section, there is a description of the columns. It is in a different orientation than the file, so maybe was missed!

I’ll paste that here for reference, too.

Hopefully this helps! :slight_smile:



Output

DESeq2 generates a tabular file containing the different columns and optional visualized results as PDF.

Column Description
1 Gene Identifiers
2 mean normalised counts, averaged over all samples from both conditions
3 the logarithm (to basis 2) of the fold change (See the note in inputs section)
4 standard error estimate for the log2 fold change estimate
5 Wald statistic
6 p value for the statistical significance of this change
7 p value adjusted for multiple testing with the Benjamini-Hochberg procedure which controls false discovery rate (FDR)

By selecting Output sample size factors in the “Output options” selection box, the size factors used to normalize the samples can also be output as a tabular file.