Topics tagged assembly

Topic	Replies	Views	Activity
Error while running metaspades usegalaxy.org support assembly , tool-help , metaspades	3	304	April 18, 2026
Fatal error: using trinity assembly , transcriptomics , tool-deprecated , rna-seq	3	922	April 21, 2026
Error with de novo assembly using Trintiy usegalaxy.org support assembly , transcriptomics , tool-deprecated , rna-seq	6	415	April 18, 2026
How to use MEGAHIT assembly , metagenomics , tool-help , megahit	3	149	April 18, 2026
SPAdes: why and how to use intact Paired End reads, plus production workflows for Bacterial assembly! usegalaxy.eu support assembly , spades , troubleshooting , iwc-workflows	2	19	April 18, 2026
Unequal contig length of haplotype assemblies? gtn-tutorial , assembly , vgp	4	42	April 18, 2026
Memory error with rnaSPAdes? Try QA/QC and Sub-sample sequences gtn-tutorial , assembly , transcriptomics , exceeds-memory-error , resources , tool-help , rnaspades	2	45	April 18, 2026
Assembly: species specific coverage questions? See VPG resources! usegalaxy.eu support assembly , vgp , iwc-workflows	2	51	April 18, 2026
What are the different types of assembly? gtn-tutorial , assembly , resources , iwc-workflows	2	40	April 18, 2026
Flye giving error with bacterial genome Resources assembly , resources	2	52	April 18, 2026
Large genome assembly? See VGP resources and access your self-serve extended data storage! Resources assembly , storage-dashboard , resources , iwc-workflows	2	36	April 18, 2026
Metaspades Single Reads usegalaxy.org support assembly	6	80	April 18, 2026
nextdenovo empty fasta files usegalaxy.eu support assembly	3	221	April 18, 2026
VGP - Workflow 1: K-mer Profiling - Need 2 PacBio Hifi Files But I Only Have 1 workflow , assembly , vgp	4	46	April 18, 2026
Why to consider Shovill instead of SPADes usegalaxy.org support assembly , spades , shovill	5	111	April 14, 2026
Cheatsheet: How to combine Spades Operation Mode and Pipeline options usegalaxy.eu support assembly , spades , resources , tool-help	5	338	April 18, 2026
Breseq fastq format troubleshooting usegalaxy.eu support assembly , tool-help , fastq-format	4	101	April 18, 2026
Long read genome assemby usegalaxy.eu support gtn-tutorial , assembly	2	62	April 18, 2026
How to analyze trimmed reads by Shovill Faster Spades Assembly tool Resources assembly , spades , resources , tool-help , shovill	3	229	April 18, 2026
Aligner for Circular genomes usegalaxy.eu support assembly	2	79	April 18, 2026
How to make fasta file in a single sequence read like a reference genome? assembly	2	180	April 18, 2026
Troubleshooting: BlobToolKit error after Diamond usegalaxy.eu support assembly , tool-help , blobtoolkit	4	65	April 18, 2026
N50 statistic for rnaviralSPades usegalaxy.eu support assembly , tool-help , spades_rnaviralspades	3	85	April 18, 2026
Number of polishing iterations in Flye assembly and Pseudogene count gtn-tutorial , assembly	3	206	April 18, 2026
Error when parsing assembly graph data in Bandage Image usegalaxy.eu support assembly , visualization	3	162	April 18, 2026
complete chromosome sequence assembly	2	54	April 18, 2026
Getting high number of pseudogenes assembly	2	98	April 18, 2026
Assembly of single-end and paired-end sequences assembly , spades , tool-help	6	292	April 18, 2026
Flye crashed with out of memory error usegalaxy.org support assembly , exceeds-memory-error	4	315	April 18, 2026
De novo vs Reference-guided Assembly with MIRA v3.4 usegalaxy.eu support assembly	2	227	April 18, 2026