|
Trinotate error, probably data import issue
|
|
3
|
65
|
October 8, 2025
|
|
Setup for Annovar
|
|
4
|
78
|
March 21, 2025
|
|
How to run MiXCR or AIRR-seq analysis
|
|
3
|
114
|
July 24, 2024
|
|
Extract CuffDiff tool
|
|
1
|
141
|
February 8, 2024
|
|
SRA-Toolkit Faster Download and Extract Reads in FASTQ: fasterq-dump: command not found
|
|
5
|
663
|
January 31, 2024
|
|
Track height in trackster
|
|
2
|
296
|
November 20, 2023
|
|
Trackster adding new tracks to visualisation
|
|
5
|
1526
|
November 20, 2023
|
|
Trackster not loading dataset with server indexed "database" assigned
|
|
4
|
786
|
November 20, 2023
|
|
Convert VCF to pg_snp and gd_snp
|
|
5
|
631
|
April 13, 2023
|
|
gatk picard index builder error
|
|
4
|
451
|
February 10, 2023
|
|
Can't find Bowtie version1 in the tool boxes
|
|
2
|
351
|
October 31, 2022
|
|
An error of Trinity de novo assembly of RNA-seq data -- Disabled tool, use RNA-Spades instead
|
|
5
|
598
|
July 23, 2022
|
|
Tools update request
|
|
3
|
410
|
February 10, 2023
|
|
Is there anything available to replace the deprecated Genome Diversity tools
|
|
5
|
692
|
November 4, 2021
|
|
annovar on galaxy v0.2 not working
|
|
0
|
522
|
October 7, 2021
|
|
Cuffmerge does not merge to one GTF file -- Deprecated tool: consider alternative methods
|
|
1
|
630
|
September 9, 2021
|
|
Unable to use 'ANNOVAR Annotate VCF' to annotate my vcf file
|
|
1
|
676
|
August 27, 2021
|
|
Cuffdiff bam sort error
|
|
1
|
522
|
April 13, 2021
|
|
Unable to run Unicycler or ABySS
|
|
3
|
778
|
February 10, 2023
|
|
ABySS fungal de novo genome assembly: Update, ABySS removed from usegalaxy.org, alternative usegalaxy.eu
|
|
1
|
1325
|
January 13, 2021
|
|
Galaxy error using Velveth error -- Deprecated tool suite: try SPAdes instead
|
|
1
|
928
|
December 21, 2020
|
|
Need help with selecting reference genome in Galaxy installed locally
|
|
2
|
1281
|
December 1, 2020
|
|
Project help...(variant analysis)
|
|
1
|
2533
|
August 3, 2020
|
|
getSpliced() error: improper genomic coordinate 46954453 on chrUn_random for TCONS_00084296
|
|
2
|
1743
|
June 18, 2020
|
|
Cuffmerge error: duplicate/invalid 'transcript' feature ID=Ma03_t01040.3
|
|
3
|
1143
|
June 18, 2020
|
|
Data paused and keep getting error: Tophat RNA data -- Tophat/Tophat2 Deprecated, use HISAT2
|
|
1
|
777
|
May 8, 2020
|
|
i got this error when i wanted to Evaluate the depth of coverage of the aligned region -- ALL GATK 1.4 tools are deprecated and should be avoided.
|
|
5
|
998
|
April 23, 2020
|
|
Error message when running 'Convert' tool under 'Genome Diversity' option -- All Genome Diversity tools are now deprecated and should be avoided
|
|
3
|
847
|
April 22, 2020
|
|
ANNOVAR alternative
|
|
1
|
1219
|
April 8, 2020
|
|
Annotate VCF with gene names
|
|
3
|
3945
|
March 12, 2020
|