On obtaining current eggNOG data

[mmnashrullah]

Hi All,

After finally made it works, during the building of the Trinotate SQL Boilerplate, I found that one of the data sources is NOG annotations taken from eggNOG4.5.

We know that current version of eggNOG is eggNOG 6. However, I found that eggNOG 6 possess data organization that is different than eggNOG 4.5 data, and I can’t find NOG annotations.

Maybe anyone knows on how to obtain NOG annotations in similar format as in eggNOG 4.5 from eggNOG 6?

Gratefully,
Malik

[jennaj]

@mmnashrullah

After finally made it works, during the building of the Trinotate SQL Boilerplate,

Great! I know that wasn’t easy.

@mmnashrullah

Maybe anyone knows on how to obtain NOG annotations in similar format as in eggNOG 4.5 from eggNOG 6?

The primary index keys are different, so that makes the conversion complicated. I don’t know of anyone who has done that in the Galaxy ecosystem, and I didn’t find anything with a broader Github search, however maybe someone will see or find this post later and have some ideas.

But, I think you’ll probably need to do this yourself.