I can not find Extract CuffDiff tool in galaxy australia, so any help to find or alternative way to extract RNA-Seq SQLite result data?
The CuffDiff tool and most others from the original Tuxedo pipeline have been deprecated. That means they won’t work on the current releases of Galaxy.
Alternative differential expression tools are covered in the GTN tutorials →
These do not create a “database” of the data but instead work with flat files in tabular formats.