I am trying to analysis ChIP seq data . I got MultiQC, coverage from MACS2 (bigwig), bedtools annotatedbed on data. I hope i got everything, now i need to go for further step to find the the promoter region, but I am unable to the same. Please help me. I can share my ID and password for anybody who can help me
Welcome @Krishnendu_Goswami
First, for this
You never need to grant access to your account when working in Galaxy! Instead, you can share your work then others can review, offer feedback, or import, do stuff in their copy, share back with you!! This protects your data – someone who can log into your account could do anything you could do, including purging histories or the account itself! Maybe by accident!
Then for your primary question about example protocols, have you seen the
Galaxy Training Network (GTN) tutorials and workflow templates yet?
This would be a good place to start.
With this tutorials like these seeming to be the closest to your current steps so far.
And this one exploring TSS sites specifically.
Hope this helps! If you get stuck,you can share your history back here for community feedback! This includes an FAQ that explains how to share data! ![]()