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Bismark mapping with Fatal Error exit
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2
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40
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October 16, 2025
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Cut and run: MACS2 error
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6
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80
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July 9, 2025
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Running nextflow nfcore pipelines using a singularity
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7
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1643
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March 17, 2026
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Methlydacel methylation bias weird output - methylation almost 100% with strange spikes
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2
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123
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June 14, 2024
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How to normalised ChIP-Seq data set with Spike-in
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1
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265
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June 8, 2024
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HiCexplorer issues
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1
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121
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April 29, 2024
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Troubleshooting Issue with hicBuildMatrix Tool for Analyzing HiC Data
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2
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146
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March 4, 2024
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hicBuildMatrix seeting for restriction cut file or a bin size
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1
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182
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March 4, 2024
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ChIPseeker missing first peak in the interval file?
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2
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277
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January 10, 2024
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MACS on galaxy giving me an error with python: bad interpreter
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1
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194
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December 21, 2023
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The plotHeatmap (DeepTool) does not produce the desired heatmap/ ChIP-seq analysis (H3K4me3)
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4
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793
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October 27, 2023
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(HiCPlotTAD)This will generate an empty track!!
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12
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418
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October 21, 2023
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Rfile throwing error
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1
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222
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October 20, 2023
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Usage help -- single end versus paired end BAM options
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5
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718
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November 10, 2023
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What is the blue and red exactly in Plotheatmap after computeMatrix of my chip-seq bw files?
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0
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387
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October 5, 2023
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Help with making peaks MACS Chip-sequence analysis
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1
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429
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October 2, 2023
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How to convert fastq.gz to fastqsanger.gz
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4
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1480
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August 24, 2023
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Metilene tool fails on ENCODE bigWigToBedGraph converted data
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16
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925
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December 21, 2023
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MethylDackel, GTN Tutorial Galaxies, and DNA Methylation
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9
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1099
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June 20, 2023
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Metilene tool usage
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7
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1060
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June 20, 2023
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Score column in narrowPeak file?
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2
|
1365
|
May 10, 2023
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How to arrange samples for Diffbind analysis
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6
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1811
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May 4, 2023
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FastQC analysis of ChIPseq sample
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2
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669
|
December 20, 2023
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Chip-seq biological replicates, multiple timepoints
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1
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411
|
April 13, 2023
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Help with Diffbind and multiple conditions
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1
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555
|
April 12, 2023
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Bowtie2 mapping statistics
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1
|
491
|
March 29, 2023
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Problems with my Bismark Mapper results
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1
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364
|
March 1, 2023
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Can't find Bowtie version1 in the tool boxes
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2
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351
|
October 31, 2022
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new annotated bacterial genome
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4
|
700
|
January 26, 2023
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outMultimapperOrder in STAR alignment
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2
|
506
|
September 23, 2022
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