I want to map WGS against a reference but the species is not on the drop down reference list and it says I should contact Galaxy Team. Please advise
Assuming you want to use bowtie2. Above the dropdown reference list there is another option. By default it is set to “Use a built-in genome index”. You can change this to “Use a genome from the history and build index”. Now you can upload your own reference.
Hi i am trying to upload a single large file of 38.4Gb, but it is very slow and after a time it drops out. Please could you let me know how to achieve this upload. I tried to look for Galaxy’s FTP server but couldn’t find it in user preferences.