Hi all,
I’m trying to do variant calling on some bacterial isolates compared to a reference. I’ve used the snippy tool and retrieved various output files. The output file of the snp table lists all the type of variants, location and what is changing etc. However, half the table seems to be blank. I’m looking to see what/ if any snps actually change the protein sequence. I have been advised to use snippy as it should state if the snps are synonymous or non-synonymous. Does anyone know where I can find this information after using the snippy tool, or am I missing something?
Thanks
Hi @Megan_Joyce
Have a look at:
Kind regards,
Igor
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