Topics tagged database

Topic	Replies	Views	Activity
Kraken2 build databases download fails with not found path server-admin , database , toolshed , kraken2 , usegalaxy-ca	10	46	February 6, 2026
Custom genome? How to display in IGV! bigwigs, bams, any coordinate data database , troubleshooting , visualization , resources , ucsc_wigtobigwig	7	20	January 30, 2026
Issue upgrading database for local Galaxy usegalaxy.org support database , galaxy-local	1	39	January 23, 2026
blastp against nr database database , mapping , blast , blastp	8	3724	October 4, 2025
No link for UCSC to visualise datasets database , troubleshooting , igv , ucsc	23	495	May 24, 2024
How database assignments are used to access a fasta index: custom genomes, custom builds, server indexes Resources fasta-manipulation , database , reference-index , custom-genome , galaxy-local , troubleshooting , custom-build , resources	2	192	September 17, 2024
Adding the tardigrade (H. exemplaris) genome to Galaxy database , reference-index , igv , reference-genome	2	203	April 11, 2024
Trackster adding new tracks to visualisation usegalaxy.org support trackster , database , metadata , dataset , tool-deprecated , igv	5	1527	November 20, 2023
Files database/objects taking up huge amounts of space server-admin , database , galaxy-local , object-store	1	224	October 26, 2023
bam to bigwig conversion fail usegalaxy.eu support database	1	243	August 24, 2023
No Uniprot Swissprot database available in Diamond alignment tool for short sequences usegalaxy.org support database , reference-index	1	336	August 7, 2023
CHM13 T2T genome not found in options for some tools usegalaxy.org support database , custom-genome , macs2 , mapping , igv , custom-build	10	1085	July 20, 2023
Where to get precursor, mature, star miRNA for (MiRDeep2 Quantifier) usegalaxy.org support database , mirna , transcriptomics	1	504	November 23, 2022
Unable to select VCF with Gemini load? Tool form includes full input requirements database , metadata , troubleshooting , variant-analysis , vcf , snpeff	1	764	June 21, 2022
Database of Galaxy Main Server usegalaxy.org support database	2	387	March 1, 2022
"502 Bad Gateway" when using Postgres database on external server server-admin , gtn-tutorial , database , ansible	1	1479	September 11, 2021
Why is database so large? server-admin , database	9	1274	September 23, 2022
Error in Naive Variant Caller (NVC) in usegalaxy.org -- Resolved usegalaxy.org support database , custom-genome , usegalaxy , custom-build	7	764	February 15, 2021
Alternative to DM tools for inbuilt reference sequence usegalaxy.eu support database , custom-genome , data-manager , custom-build	3	824	November 30, 2020
DBKey necessary? usegalaxy.org support database , datatype	1	447	June 19, 2020
Samtools merge error database , mapping , reference-genome	3	2098	March 16, 2020
issue with SICER input files usegalaxy.eu support database , metadata , error-metadata	2	868	February 6, 2020
Search Data Libraries Datasets usegalaxy.org support server-admin , database , galaxy-local , data-manager , data-library	0	678	January 5, 2020
Add new version of reference genome: Tribolium castaneum (red flour beetle) Tcas5.2 usegalaxy.org support database , custom-genome , genome , reference-genome , custom-build	2	889	December 4, 2019
Tool form does not list expected indexed reference genome: Solution -- assign the "database" to the inputs usegalaxy.org support database , metadata , datatype	1	614	December 2, 2019
NCBI's GRCh38 and UCSC's hg38 database	1	1063	September 30, 2019
Allowed makeblastdb file size (1GB), cut genome to smaller pieces? usegalaxy.org support database , genome , mapping , blast	2	2206	September 3, 2019
add new version of reference genome: C.elegans WS235 ce11 usegalaxy.org support database , custom-genome	2	1147	March 26, 2019
Addition of reference genome: Phoenix dactylifera usegalaxy.org support database , custom-genome	4	985	February 7, 2019
A. franciscana genome not a listed reference usegalaxy.org support database , custom-genome	1	769	January 29, 2019