How to filter cells with mt.percentage > 5%
I cannot find a function like ```
pbmc[[“percent.mt”]] ← PercentageFeatureSet(pbmc, pattern = “^MT-”)
How to filter cells with mt.percentage > 5%
I cannot find a function like ```
pbmc[[“percent.mt”]] ← PercentageFeatureSet(pbmc, pattern = “^MT-”)
Welcome, @zgc
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Hello.
You can use “Seurat Create” tool.
From Method used
choose “Filter cells by QC metrics” and then set threshold for “Minimum percent.mt” or "Maximum percent.mt ".
Best
Amirhossein