Remove reads with low quality

[anlcorteslo]

Hi, I’m a newbie here
I’m currently working with fastq secuences from GEO and I’m trying to obtain counts in Galaxy.

In the description of the database i’m using, the researchers say “Reads filtering under criteria removing reads with 20% of the base quality lower than 13”.

My question is,
This configuration with Trimmomatic will lead me to do what they did? or how I could do it?

Thanks

[igor]

Hi @anlcorteslo
you are after Filter by quality (in FASTQ/FASTQ section).
Kind regards,
Igor