Was trying to run SNAP for the first time on my data after my 1st round of MAKER annotations. I have been following the Galaxy training/tutorial : Genome annotation with MAKER (By Anothony Bretaudeau)
I recieved the error message : Can’t locate sigtrap.pm in @INC (you may need to install the sigtrap module) (@INC contains: /usr/local/lib64/perl5/5.32 /usr/local/share/perl5/5.32 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5) at /usr/loca
I have attempted to edit the dependencies myself within my history, but I don’t seem to have the option to (likely because I don’t have permission to do so). Has anyone fixed this issue before on their own, or should I contact admin to edit the dependencies for this tool globally?
Hopefully you have solved this by now but I wanted to check in!
Most message about technical dependencies can be ignored since the dependencies are handled already by the server administrators.
Do you see any other messages in the job logs? Or on the expanded output dataset itself? Do those suggest what to check? You shouldn’t have trouble with the tutorial data but might need to tune more for your own data.
If this is not enough help, you are still welcome to generate a share link to your history and post that back into your reply. The link gives all the context at once: where you are working, the inputs, the full parameters, all of the logs.
Thank you for checking in! I was able to work around this issue by using a different instance of Galaxy. This same tool is functional on Galaxy Australia/ Galaxy Fr and it ran without any issues.
