Still the same error:
Conda dependency seemingly installed but failed to build job environment.
Looking in the log file it seems that there are conflicts during the package installation:
Still the same error:
Conda dependency seemingly installed but failed to build job environment.
Looking in the log file it seems that there are conflicts during the package installation:
requests version 2.7.0 does not exist as far as I can see.
# Name Version Build Channel
requests 2.18.4 py27hc5b0589_1 pkgs/main
requests 2.18.4 py35hb9e6ad1_1 pkgs/main
requests 2.18.4 py36he2e5f8d_1 pkgs/main
requests 2.19.1 py27_0 pkgs/main
requests 2.19.1 py35_0 pkgs/main
requests 2.19.1 py36_0 pkgs/main
requests 2.19.1 py37_0 pkgs/main
requests 2.20.0 py27_0 pkgs/main
requests 2.20.0 py36_0 pkgs/main
requests 2.20.0 py37_0 pkgs/main
requests 2.20.1 py27_0 pkgs/main
requests 2.20.1 py36_0 pkgs/main
requests 2.20.1 py37_0 pkgs/main
requests 2.21.0 py27_0 pkgs/main
requests 2.21.0 py36_0 pkgs/main
requests 2.21.0 py37_0 pkgs/main
requests 2.22.0 py27_0 pkgs/main
requests 2.22.0 py27_1 pkgs/main
requests 2.22.0 py36_0 pkgs/main
requests 2.22.0 py36_1 pkgs/main
requests 2.22.0 py37_0 pkgs/main
requests 2.22.0 py37_1 pkgs/main
requests 2.22.0 py38_0 pkgs/main
requests 2.22.0 py38_1 pkgs/main
requests 2.23.0 py36_0 pkgs/main
requests 2.23.0 py37_0 pkgs/main
requests 2.23.0 py38_0 pkgs/main
requests 2.24.0 py_0 pkgs/main
requests 2.25.0 pyhd3eb1b0_0 pkgs/main
requests 2.25.1 pyhd3eb1b0_0 pkgs/main
requests 2.26.0 pyhd3eb1b0_0 pkgs/main
requests 2.27.1 pyhd3eb1b0_0 pkgs/main
Not sure if it solves all error’s but at least one of them.
Ok I corrected the version in the xml file.
Then I tried both to run the tool by installing the dependencies manually in the admin tab, then I tried to uninstall them and let conda manage the dependencies but both failed with the same error about the failed build of the job environment.
Here’s the log:
https://drive.google.com/file/d/1aOUu1scXXS-jOh7bp2N6DtAb4IDdFgRB/view?usp=sharing
Looks like there are version conflicts. I dont know if it will fully solve your issue but requests=2.18.4 is very old and can not work with python3.8. Can you remove everything again and try a newer version like 2.23.0 or higher. I even think that requests
will automaticly be installed because of ipython or python.
You should at first try to get a combination working without Galaxy. Try conda create -c conda-forge -c bioconda tabulate=x.x ipython=y.y
until you get something working, then use the same combination in your Galaxy tool. Galaxy is doing the same thing, so if you can create a conda environment, Galaxy should be able to do the same.