I followed the tutorial on Library Generation for DIA Analysis up to
diapysef library generation where I could not find diapysef. Running your workflow produces the below information:
Following tools missing: toolshed.g2.bx.psu.edu/repos/galaxyp/diapysef/diapysef/0.3.5.0, toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathassaygenerator/OpenSwathAssayGenerator/2.5+galaxy0, toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathdecoygenerator/OpenSwathDecoyGenerator/2.5+galaxy0, toolshed.g2.bx.psu.edu/repos/galaxyp/openms_targetedfileconverter/TargetedFileConverter/2.5+galaxy0
I will appreciate your assistance.