I’m trying to use the ‘qiime2 tools import’ for SampleData[SequencesWithQuality] with ‘Single Lane Per Sample Single End Fastq Directory Format’. I think I’ve correctly build the manifest and metada files. But I keep getting the same persistent error regarding the element ‘name’. This parameter as…

Meanwhile in the Matrix people already helped me with this problem. So for the data “ARA.SOIL.1fastq.gz”, the name “ARA_S1_L001_R1_001.fastq.gz” doesn’t create an error. Hope this helps anyone having the same problem.

Update: The import function has more discussion cross posted over at the EU Matrix chat → You're invited to talk on Matrix Welcome, @sashaphex The “element identifiers” are the names of the files inside the collection. When creating a collection, the file extensions are usually removed – that is…

Hey @jennaj Thanks for such a quick response. My problem lies here: [image] I can’t seem to progress after this step because I can’t even execute my job… Do you know how I could solve this or maybe if there is a way to work around it? Maybe the collection method was you mentioned? p.s. thank …

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Regex Problem using Import tool on QIIME2 for Galaxy

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