Hi @wm75,
tied out the following pattern with the “NOT Matching” option and it worked very well:
^(##INFO=<ID=((CDA)|(OTH)|(S3D)|(WTD)|(dbSNPBuildID)|(SLO)|(NSF)|(R3)|(R5)|(NSN)|(NSM)|(G5A)|(COMMON)|(RS)|(RV)|(TPA)|(CFL)|(GNO)|(VLD)|(ASP)|(ASS)|(REF)|(U3)|(U5)|(WGT)|(MTP)|(LSD)|(NOC)|(DSS)|(SYN)|(KGPhase3)|(CAF)|(VC)|(MUT)|(KGPhase1)|(NOV)|(VP)|(SAO)|(GENEINFO)|(INT)|(G5)|(OM)|(PMC)|(SSR)|(RSPOS)|(HD)|(PM)|(CDS)|(AA)|(GENE)|(CNT)|(STRAND)|(CLNSIG)|(CLNALLE)|(CLNORIGIN)|(CLNSRC)|(CLNREVSTAT)|(CLNDSDB)|(CLNACC)|(CLNDBN)|(CLNDSDBID)|(CLNHGVS)|(CLNSRCID)|(ANN)|(LOF)|(NMD)))|(##SnpEffVersion)|(##SnpSiftVersion)|(##SnpEffCmd)|(##SnpSiftCmd="SnpSift annotate -id /srv/qgen/data/annotation/((common_all_20160601.vcf.gz)|(CosmicAllMuts_v69_20140602.vcf.gz)|(clinvar_20160531.vcf.gz)))
Thanks a lot!